In this repository are stored ImageJ scripts that were developed for automated microfossil images processing and segmentation.
- AutoRadio_Segmenter.ijm: Automated processing of a root folder ("Core"), containing subfolders ("Samples") of images (Fields of View, a) that will invert, create Region of Interests (ROIs, b) for each particle and segment and save them as individual images into separate subfolders corresponding to the different "Samples" of the processed root "Core" folder. For more information: https://theguyonhismicroscope.wordpress.com/autoradio-segmenter/
- MorFo_.ijm: Automated processing of a folder of images (a) that will binarise them, separate particles that are in contact with each other (b), measure several morphological parameters for each particle (c), and export processed images and results in two tables: one for each particle, and one for each sample (averaged). For more information: https://theguyonhismicroscope.wordpress.com/morfo/
Ni Vision / LabView Scripts
- PoreViewG.vascr: Automated processing of images of crushed benthic foraminifera Globobulimina species that will binarise the original images (a and b), reconstruct the tests' fragments and measure their porosity(c). It will export the results in a table. The .zip file contain the .vascr script and a .docx description of the script.
