TiagoBelintani
Currently, using computational tools, I research transcriptome, phylogeny, morphology, and triatomine morphometry.
Pinned Repositories
assembly_UCE
This tutorial describes assembling a UCE with the Phyluce package in a SLURM (Simple Linux Utility for Resource Management) system.
extract_sequences
Script to Filter Nucleotide Sequences
fast_dump.py
The script downloads SRA files and generates fastq files for specified SRA numbers corresponding to different species.
iqtree_wrapper.sh
Script Description: IQ-TREE Wrapper Script This Bash script acts as a wrapper for IQ-TREE, facilitating the batch processing of multiple protein sequence files for phylogenetic tree construction. The script takes as input a directory containing protein sequences in FASTA format and an output directory to save the IQ-TREE results.
mafft_wapper.sh
Script Description: MAFFT Wrapper Script This Bash script serves as a wrapper for the Multiple Alignment using Fast Fourier Transform (MAFFT) tool. It automates the process of aligning multiple protein sequence files in the FASTA (.fa) format.
raxml-ng-wrapper-
Shell script to use raxml-ng in a directory with several fasta or phylip files. The script has also been described to clean up the outputs and leave only the trees: .bestTree . support.
spades_with_many_files
This code allows you to search for R1.fastq.gz and R2.fastq.gz files present in a directory and start them with spades assemble
Trim_UCE_reads_trimmmomatic
This tutorial describes how to trim UCE reads using Trimmomatic
tutorial_conf_-illumiprocessor-
Neste tutorial descrevo detalhadamente o preparo do config para illumiprocessor
uce-assembly-with-trinity
Python Scripts for Assembling ECU's with Trinity: Option to the Phyluce Package
TiagoBelintani's Repositories
TiagoBelintani/assembly_UCE
This tutorial describes assembling a UCE with the Phyluce package in a SLURM (Simple Linux Utility for Resource Management) system.
TiagoBelintani/extract_sequences
Script to Filter Nucleotide Sequences
TiagoBelintani/fast_dump.py
The script downloads SRA files and generates fastq files for specified SRA numbers corresponding to different species.
TiagoBelintani/iqtree_wrapper.sh
Script Description: IQ-TREE Wrapper Script This Bash script acts as a wrapper for IQ-TREE, facilitating the batch processing of multiple protein sequence files for phylogenetic tree construction. The script takes as input a directory containing protein sequences in FASTA format and an output directory to save the IQ-TREE results.
TiagoBelintani/mafft_wapper.sh
Script Description: MAFFT Wrapper Script This Bash script serves as a wrapper for the Multiple Alignment using Fast Fourier Transform (MAFFT) tool. It automates the process of aligning multiple protein sequence files in the FASTA (.fa) format.
TiagoBelintani/raxml-ng-wrapper-
Shell script to use raxml-ng in a directory with several fasta or phylip files. The script has also been described to clean up the outputs and leave only the trees: .bestTree . support.
TiagoBelintani/spades_with_many_files
This code allows you to search for R1.fastq.gz and R2.fastq.gz files present in a directory and start them with spades assemble
TiagoBelintani/Trim_UCE_reads_trimmmomatic
This tutorial describes how to trim UCE reads using Trimmomatic
TiagoBelintani/tutorial_conf_-illumiprocessor-
Neste tutorial descrevo detalhadamente o preparo do config para illumiprocessor
TiagoBelintani/uce-assembly-with-trinity
Python Scripts for Assembling ECU's with Trinity: Option to the Phyluce Package