TienMPhan

TienMPhan's Stars

• langchain-ai/langchain

  🦜🔗 Build context-aware reasoning applications

  Language:Jupyter Notebook92.1k6807.5k14.7k

• deepchem/deepchem

  Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

  Language:Python5.4k1441.7k1.7k

• Future-House/paper-qa

  LLM Chain for answering questions from documents with citations

  Language:Python3.9k39143368

• rasbt/machine-learning-book

  Code Repository for Machine Learning with PyTorch and Scikit-Learn

  Language:Jupyter Notebook3.3k54951.2k

• AIFSH/NativeSpeaker

  make your Speaker talking as Native style with own voice！

  Language:Python24314562

• alanwilter/acpype

  OFFICIAL: AnteChamber PYthon Parser interfacE

  Language:Python19584545

• HWaymentSteele/AF_Cluster

  Predict multiple protein conformations using sequence clustering and AlphaFold2.

  Language:Jupyter Notebook12841520

• patrickbryant1/SpeedPPI

  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning

  Language:Python7042616

• MDAnalysis/WorkshopMDMLEdinburgh2022

  Language:Jupyter Notebook63121114

• dwhswenson/contact_map

  Contact map analysis for biomolecules; based on MDTraj

  Language:Python4042917

• bjornwallner/alphafoldv2.2.0

  Open source code for AlphaFold.

  Language:Python34106

• patrickbryant1/MoLPC

  Modelling of Large Protein Complexes

  Language:Jupyter Notebook343199

• msmbuilder/msmbuilder2022

  Statistical models for biomolecular dynamics

  Language:Python3371117

• ZhangGroup-MITChemistry/OpenABC

  OpenMM implementation of MOFF, MRG-CG, and HPS models.

  Language:Python24214

• noegroup/reform

  A simple implementation of replica exchange MD simulations for OpenMM.

  Language:Python22222

• AndersJing/RaptorX-Single

  Language:Python17203

• GT-NucleicAcids/pnab

  Language:C++9223

• intbio/MolModEdu

  Educational Notes on Molecular Modeling

  Language:Jupyter Notebook9627

• owenvickery/metadynamics_analysis

  A script for analysing well tempered metadynamics

  Language:Python9201

• luigibonati/md-stateinterpreter

  Language:Jupyter Notebook8404

• allmwh/IFF

  IFF: Identifying key residues in intrinsically disordered regions of proteins using machine learning

  Language:Jupyter Notebook30

• intbio/Armeev_et_al_2021

  Language:HTML3305

• bio-phys/SAXS_BioEn

  Language:Jupyter Notebook2100

• intbio/pynucl

  A library for comprehensive analysis of nucleosome structures

  Language:Python2302

• intbio/PyNAMod

  The aim of this project is to provide a set of python tools to perform modelling of various DNA structures

  Language:Python1301

• SGenheden/iRED

  Scripts to perform iRED analysis with Amber

  Language:Python11

• shirtsgroup/SAMPL5_comparison

  Paper for comparison of simulation input files and energy functions for SAMPL5

  Language:TeX170

• TienMPhan/Enhanced_Sampling_Methods_Tutorials

  Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..

  Language:Shell1000

• TienMPhan/HPS-SS-model

  HPS-SS model for IDPs

  Language:Fortran1000

• yamule/alphafold

  Open source code for AlphaFold.

  Language:Python1101