TimMonko
Postdoctoral researcher in the Bastian Lab at University of Minnesota Twin Cities. Studying early periods of neural development, axons, and mitochondria.
University of MinnesotaMinnesota, US
Pinned Repositories
2023-FeD-TH-manuscript
Repository for data and code pertaining to 2023 manuscript investigating mRNA and ATP levels in iron deficient primary hippocampal cultures.
bioimage-resources
Resources for bioimage analysis, primarily focused around napari and neurodevelopment research.
bioio
Image reading, metadata management, and image writing for Microscopy images in Python
bioio-ome-tiff
A BioIO reader plugin for reading Tiff files in the OME format.
devbio-napari
Resolving clEsperanto Assistant select_gpu() error
ImageAnalysis_v2
For imaging with scripting ui
napari-explorer
napari-ndev
A collection of plugin widgets by Tim Monko -- focused on neural development -- but intended to be broadly applicable to microscopy.
NeurogenesisThalamocorticalPaper
For 2021 manuscript. See biorxiv link
skan
Python module to analyse skeleton (thin object) images
TimMonko's Repositories
TimMonko/napari-ndev
A collection of plugin widgets by Tim Monko -- focused on neural development -- but intended to be broadly applicable to microscopy.
TimMonko/bioimage-resources
Resources for bioimage analysis, primarily focused around napari and neurodevelopment research.
TimMonko/napari-explorer
TimMonko/skan
Python module to analyse skeleton (thin object) images
TimMonko/2023-FeD-TH-manuscript
Repository for data and code pertaining to 2023 manuscript investigating mRNA and ATP levels in iron deficient primary hippocampal cultures.
TimMonko/bioio
Image reading, metadata management, and image writing for Microscopy images in Python
TimMonko/bioio-ome-tiff
A BioIO reader plugin for reading Tiff files in the OME format.
TimMonko/devbio-napari
Resolving clEsperanto Assistant select_gpu() error
TimMonko/ImageAnalysis_v2
For imaging with scripting ui
TimMonko/napari_scripts
Collection of useful (to me) python scripts for interacting with napari
TimMonko/NeurogenesisThalamocorticalPaper
For 2021 manuscript. See biorxiv link
TimMonko/timmonko.github.io
TimMonko/napari
napari: a fast, interactive, multi-dimensional image viewer for python