TimNicholsonShaw

PhD Candidate and UC San Diego's resident bad boy.

Pinned Repositories

affirmation
Language:Python0 2 01
AnOThER-Seq
Language:Jupyter Notebook00
BedExpander
Language:Python00
BG_GS_Nanopore_Analysis
Tools for looking at nanopore data from my Beta-Globin Gene-specific sequencing
Language:Jupyter Notebook00
BIMM143_examples
00
NorthernAnalysis
Language:HTML00
RNA-Seq-Analysis
Language:HTML00
tailer
Language:Python10
tailer-analysis
Language:R0 1 00
timnicholsonshaw.github.io
Language:HTML10

TimNicholsonShaw's Repositories

TimNicholsonShaw/tailer
Language:Python10
TimNicholsonShaw/timnicholsonshaw.github.io
Language:HTML10
TimNicholsonShaw/affirmation
Language:Python0 2 01
TimNicholsonShaw/AnOThER-Seq
Language:Jupyter Notebook00
TimNicholsonShaw/BedExpander
Language:Python00
TimNicholsonShaw/BG_GS_Nanopore_Analysis
Tools for looking at nanopore data from my Beta-Globin Gene-specific sequencing
Language:Jupyter Notebook00
TimNicholsonShaw/BIMM143_examples
00
TimNicholsonShaw/NorthernAnalysis
Language:HTML00
TimNicholsonShaw/RNA-Seq-Analysis
Language:HTML00
TimNicholsonShaw/tailer-analysis
Language:R0 1 00
TimNicholsonShaw/BIMM143_SPR22
Language:HTML
TimNicholsonShaw/eCLIP_Analysis
TimNicholsonShaw/fastq_decomposer
Language:Python
TimNicholsonShaw/jla-demultiplexer
Language:Python1 0
TimNicholsonShaw/learn_git
Language:HTML
TimNicholsonShaw/piler
1 0
TimNicholsonShaw/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
TimNicholsonShaw/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python0 0
TimNicholsonShaw/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Language:R
TimNicholsonShaw/timutils
Reusable analysis code
Language:R