Issue with installation using make
Closed this issue · 2 comments
Hi!
I got the following when I run 'make' (following your installation guide; Host system: aarch64-apple-darwin20.6.0):
Making all in src
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-am
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT run_kalign.o -MD -MP -MF .deps/run_kalign.Tpo -c -o run_kalign.o run_kalign.c
mv -f .deps/run_kalign.Tpo .deps/run_kalign.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT idata.o -MD -MP -MF .deps/idata.Tpo -c -o idata.o idata.c
mv -f .deps/idata.Tpo .deps/idata.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT tldevel.o -MD -MP -MF .deps/tldevel.Tpo -c -o tldevel.o tldevel.c
mv -f .deps/tldevel.Tpo .deps/tldevel.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT tlmisc.o -MD -MP -MF .deps/tlmisc.Tpo -c -o tlmisc.o tlmisc.c
mv -f .deps/tlmisc.Tpo .deps/tlmisc.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT esl_stopwatch.o -MD -MP -MF .deps/esl_stopwatch.Tpo -c -o esl_stopwatch.o esl_stopwatch.c
mv -f .deps/esl_stopwatch.Tpo .deps/esl_stopwatch.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT tlrng.o -MD -MP -MF .deps/tlrng.Tpo -c -o tlrng.o tlrng.c
mv -f .deps/tlrng.Tpo .deps/tlrng.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT parameters.o -MD -MP -MF .deps/parameters.Tpo -c -o parameters.o parameters.c
mv -f .deps/parameters.Tpo .deps/parameters.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT alphabet.o -MD -MP -MF .deps/alphabet.Tpo -c -o alphabet.o alphabet.c
mv -f .deps/alphabet.Tpo .deps/alphabet.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT alignment_parameters.o -MD -MP -MF .deps/alignment_parameters.Tpo -c -o alignment_parameters.o alignment_parameters.c
mv -f .deps/alignment_parameters.Tpo .deps/alignment_parameters.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT pick_anchor.o -MD -MP -MF .deps/pick_anchor.Tpo -c -o pick_anchor.o pick_anchor.c
mv -f .deps/pick_anchor.Tpo .deps/pick_anchor.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT bisectingKmeans.o -MD -MP -MF .deps/bisectingKmeans.Tpo -c -o bisectingKmeans.o bisectingKmeans.c
mv -f .deps/bisectingKmeans.Tpo .deps/bisectingKmeans.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT sequence_distance.o -MD -MP -MF .deps/sequence_distance.Tpo -c -o sequence_distance.o sequence_distance.c
mv -f .deps/sequence_distance.Tpo .deps/sequence_distance.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT euclidean_dist.o -MD -MP -MF .deps/euclidean_dist.Tpo -c -o euclidean_dist.o euclidean_dist.c
mv -f .deps/euclidean_dist.Tpo .deps/euclidean_dist.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT weave_alignment.o -MD -MP -MF .deps/weave_alignment.Tpo -c -o weave_alignment.o weave_alignment.c
mv -f .deps/weave_alignment.Tpo .deps/weave_alignment.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT rwalign.o -MD -MP -MF .deps/rwalign.Tpo -c -o rwalign.o rwalign.c
mv -f .deps/rwalign.Tpo .deps/rwalign.Po
gcc -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -ffunction-sections -fdata-sections -O3 -std=gnu11 -MT misc.o -MD -MP -MF .deps/misc.Tpo -c -o misc.o misc.c
In file included from misc.c:33:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/immintrin.h:13:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/x86gprintrin.h:15:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/hresetintrin.h:42:27: error: invalid input constraint 'a' in asm
asm ("hreset $0" :: "a"(__eax));
^
In file included from misc.c:33:
In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/immintrin.h:17:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:50:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:129:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:159:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:189:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:216:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:239:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:260:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:287:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:310:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:331:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:352:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:373:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:394:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:416:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:439:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:461:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:483:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_paddusw((__v4hi)__m1, (__v4hi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include/mmintrin.h:504:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
return (__m64)__builtin_ia32_psubb((__v8qi)__m1, (__v8qi)__m2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[2]: *** [misc.o] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
Hi,
Thanks for reporting!
I presume this error happens on one of the new(ish) M1 macs?
The error points to the fact that I seem to have forgotten to wrap a header include in a check. I now fixed this - could you do a pull and try to compile again?
Thanks, Timo
It worked, thank you so much for your quick help!