TimoLassmann/kalign

Issues

• "offending character" warnings

  #44 opened 6 months ago by AledHe
  0

• ‘KALIGN_PACKAGE_NAME’ undeclared (first use in this function)

  #40 opened 7 months ago by grenaud
  3

• Version 3.4.0 seems to break clustal format parsers

  #41 opened 7 months ago by biomadeira
  3

• kalign fail when sequences in input file are almost the same.

  #43 opened 7 months ago by xiekunwhy
  1

• Memory consumption usage

  #42 opened 8 months ago by Tang-pro
  4

• Turning AVX2 on or off, the program produces different outputs

  #39 opened a year ago by Shawdox
  4

• --type removed from kalign3

  #38 opened 2 years ago by Rohit-Satyam
  3

• Final characters are sometimes missing in alignment when one sequence is a prefix of another

  #37 opened 2 years ago by jeizenga
  2

• Many unwanted log messages are printed to stderr when using kalign as a library

  #36 opened 2 years ago by jeizenga
  1

• About the latest release

  #35 opened 2 years ago by chenrui333
  1

• Segmentation fault (core dumped) - 10 million sequence dataset

  #34 opened 2 years ago by Shubhangi1397
  5

• Image for readme

  #1 opened 2 years ago by TimoLassmann
  0

• Benchmark images

  #2 opened 5 years ago by TimoLassmann
  1

• how to adjust the penalty parameter

  #29 opened 2 years ago by huangnengCSU
  1

• Print log in stderr

  #26 opened 2 years ago by apcamargo
  1

• number of threads

  #28 opened 2 years ago by ardy20
  2

• Library and Public Headers

  #33 opened 2 years ago by Robin-Rounthwaite
  14

• trouble in installing

  #32 opened 2 years ago by huawen-poppy
  4

• Substitution Matrix

  #31 opened 2 years ago by tanas80
  0

• Segmentation fault for large datasets

  #30 opened 3 years ago by Shubhangi1397
  7

• Issue with installation using make

  #27 opened 3 years ago by mtva0001
  2

• Is the old "bonus score" still available in version 3?

  #25 opened 3 years ago by biomadeira
  10

• Choose the number of threads

  #24 opened 4 years ago by ATVincent
  1

• Cannot pass sequences via standard input to `kalign`.

  #14 opened 5 years ago by todddeluca
  5

• WARNING: AVX2 instruction set not found! When it is available

  #22 opened 4 years ago by vmkalbskopf
  1

• using muti-thread

  #23 opened 4 years ago by GGanakin
  3

• tagged releases for 2.3.4 and 2.3.5

  #21 opened 4 years ago by mr-c
  2

• difficulties for calling kalign from inside a C program

  #17 opened 5 years ago by flandrs
  1

• Error when linking on MacOS

  #16 opened 5 years ago by gperriere
  6

• Feature requests: exporting distance matrix & medoid sequence

  #15 opened 5 years ago by andreaswallberg
  1

• libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and

  #12 opened 5 years ago by tseemann
  1

• FAIL: run_io_test.sh on MacOS

  #9 opened 5 years ago by tseemann
  6

• Check for `glibtoolize` ?

  #11 opened 5 years ago by tseemann
  1

• Add 2019 citation to refs

  #10 opened 5 years ago by tseemann
  1

• --version / -v is not in the help output

  #7 opened 5 years ago by tseemann
  1

• ./configure gets run twice?

  #6 opened 5 years ago by tseemann
  1

• Add --version or -V switch

  #4 opened 5 years ago by tseemann
  3

• Please make a release

  #3 opened 5 years ago by tseemann
  3

• tldevel submodule not documented

  #5 opened 5 years ago by tseemann
  2