Pinned Repositories
BlockPolish
BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer
BPFGM
BlockPolish feature generation module (BPFGM) is used to divide the draft assembly into blocks from reads-to-assembly alignment and generate feature matrices used for predicting consensus sequence.
compleasm
A genome completeness evaluation tool based on miniprot
longcallR
LongcallR is a small variant caller for single molecule long-read RNA-seq data
longcallR-nf
longcallR-nn
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data, utilizing a ResNet50 model.
NanoSNP
A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
NeuralPolish
NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks.
SACall-basecaller
variant_detection_nf
huangnengCSU's Repositories
huangnengCSU/compleasm
A genome completeness evaluation tool based on miniprot
huangnengCSU/longcallR
LongcallR is a small variant caller for single molecule long-read RNA-seq data
huangnengCSU/NanoSNP
A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
huangnengCSU/BlockPolish
BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer
huangnengCSU/SACall-basecaller
huangnengCSU/NeuralPolish
NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks.
huangnengCSU/longcallR-nn
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data, utilizing a ResNet50 model.
huangnengCSU/longcallR-nf
huangnengCSU/variant_detection_nf
huangnengCSU/BPFGM
BlockPolish feature generation module (BPFGM) is used to divide the draft assembly into blocks from reads-to-assembly alignment and generate feature matrices used for predicting consensus sequence.
huangnengCSU/bioconda-recipes
Conda recipes for the bioconda channel.
huangnengCSU/MarginPolish
MarginPolish: Graph based assembly polishing
huangnengCSU/sublimetext-licensekey
LiCENSE KEY FOR ALL SUBLIME TEXT VERSiON
huangnengCSU/tsai
Time series Timeseries Deep Learning Machine Learning Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai