Pinned Repositories
BioDownloader
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
biomadeira.github.io
👨💻 Personal homepage
CodeReview
Python example program for Code Review (13.11.14)
pycoevol
A Python workflow to study protein-protein coevolution and interaction
pyPDBeREST
A python wrapper for the PDBe REST API
resume
Personal resume
jdispatcher-viewers
Interactive Visual Output and Functional Predictions visualisations for Job Dispatcher tool outputs
taxonomy-resolver
Builds lists of Taxonomy Identifiers based on the NCBI Taxonomy Database
jasper
Full-featured Jekyll port of Ghost's default theme Casper 👻
jasper2
Full-featured Jekyll port of Ghost's default theme Casper v2 👻
biomadeira's Repositories
biomadeira/pycoevol
A Python workflow to study protein-protein coevolution and interaction
biomadeira/biomadeira.github.io
👨💻 Personal homepage
biomadeira/BioDownloader
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
biomadeira/pyPDBeREST
A python wrapper for the PDBe REST API
biomadeira/resume
Personal resume
biomadeira/CodeReview
Python example program for Code Review (13.11.14)
biomadeira/cli-rules
Recommendations for building usable command-line interfaces
biomadeira/biomadeira
biomadeira/book-experiment
Experimental book using bookdown
biomadeira/build-your-own-x
🤓 Build your own (insert technology here)
biomadeira/citation-network-explorer
Tool for exploring local citation networks.
biomadeira/dockerfiles
Docker Tools and Workflows
biomadeira/auto-traveler
Visualise RNA secondary structure using standard layouts
biomadeira/bioconda-recipes
Conda recipes for the bioconda channel.
biomadeira/containers
Bioinformatics containers
biomadeira/containers-rules-manuscript
Recommendations to contenarized your bioinformatics software
biomadeira/EBI-nextflow-config
EBI-wide Nextflow config file
biomadeira/ebi-webservices-notebooks
Training material used in some EMBL-EBI courses
biomadeira/edu
BioContainers Documentation.
biomadeira/gae_bib2yaml
Python code deployed to GAE
biomadeira/gae_papersetal
Python code deployed to GAE
biomadeira/gae_pubmed2rss
Python code deployed to GAE
biomadeira/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
biomadeira/homebrew-biotools
Home for some bioinformatics homebrew formulae used in my work 🍺🔬
biomadeira/jekyllthemes
A directory of the best-looking themes for Jekyll blogs
biomadeira/Packt-Publishing-Free-Learning
Scripts that automatically claim and download free daily eBooks from https://www.packtpub.com/packt/offers/free-learning
biomadeira/r-novice-inflammation
Software Carpentry introduction to R for novices using inflammation data.
biomadeira/rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
biomadeira/rscripts
A bunch of R scripts for training/testing SNNS neural networks
biomadeira/shields
Concise, consistent, and legible badges in SVG and raster format