vmkalbskopf

wf-human-variation

paperscraper

Tools to scrape publication metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

TPMCalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

nextflow

A DSL for data-driven computational pipelines

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

exp1

first try for the course

ftp

rna-seq-ir

Snakemake pipeline for Illumina RNA-sequencing experiments, including variant calling and more - relating to pop gen and insecticide resistance

vmkalbskopf/exp1

first try for the course

vmkalbskopf/ftp

vmkalbskopf/rna-seq-ir

Snakemake pipeline for Illumina RNA-sequencing experiments, including variant calling and more - relating to pop gen and insecticide resistance