This repository is for scripts, results, and documentation relating to the basic analysis of avaliable coral genome data (e.g., BUSCO analysis, genome stats, etc.).
The 01_Data/2021-12-03 directory contains information about the raw data that is used in this analysis.
the 01_Data/2021-12-03/coral directory contains information about the location and pre-processing of coral genomes and transcriptomes (plus out group species) that were downloaded for use in this analysis.
The 04_Results/2022-02-03 directory contains two markdown files:
README_genomes.mddetails the analysis performed on each of the genomesREADME_transcriptomes.mddetails the analysis performed on each of the transcriptomes
Bash scripts that were used to actually perform the analysis are the relveant sub-directories and follow the general naming format: run*.sh. The log files produced by these bashs scripts are generally called run*.sh.log*.