TimothyStiles
Building the world's most modern, open source, software library for engineering organisms.
San Francisco
Pinned Repositories
poly
A Go package for engineering organisms.
buster
A Go Package for running Go package CICD pipelines in Go...
ditto
A Go package for mockless 3rd party API testing.
evm
Eulerian Video Magnification
how-to-code
The resources I always recommend to new programmers.
how-to-research-almost-anything
A three part tutorial series on how to access all of the MOOCs, books, and scientific papers.
how-to-synbio
The resources I always recommend to new synthetic biologists.
meshdiff
A command line tool to visually diff 3D meshes
worst-genbank-ever
The most awful genbank file you'll ever need to parse.
TimothyStiles's Repositories
TimothyStiles/how-to-synbio
The resources I always recommend to new synthetic biologists.
TimothyStiles/how-to-code
The resources I always recommend to new programmers.
TimothyStiles/graphein
Protein Graph Library
TimothyStiles/homebrew-poly
Homebrew Formulae to @poly binaries
TimothyStiles/bio
Go library for parsing biological data formats and tool outputs from UniProt, PDB (Structure/Model/Chain/Residue/Atom - SMCRA), Pfam, DSSP, Fpocket and more. Plus: comparable position mappings!
TimothyStiles/eventually
Get the URL for the resource that triggered current workflow.
TimothyStiles/go2colab
A Go utility to convert Go example tests into jupyter notebooks.
TimothyStiles/poly-benchmarks
A separate repo to benchmark poly against other comparable libraries.
TimothyStiles/alphafold
Open source code for AlphaFold.
TimothyStiles/awesome-go-linters
A curated list of awesome Go linters. More than 60 linters and tools!
TimothyStiles/bioicons
A library of free open source icons for science illustrations in biology and chemistry
TimothyStiles/blog
TimothyStiles/breakpoint-io
Visual Studio Code extension allowing you to import and export breakpoints
TimothyStiles/cli-website
Our website in CLI format
TimothyStiles/echodb
An embedded, in-memory, immutable, copy-on-write, key-value database engine
TimothyStiles/EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
TimothyStiles/EVEscape
Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
TimothyStiles/friendzymes-toolkit
TimothyStiles/Github-Twittction
GitHub Action to post on twitter when any event triggers on repository.
TimothyStiles/gogm
Golang Object Graph Mapper for Neo4j
TimothyStiles/hacker-sounds
This Visual Studio Code extension automatically turns you into a very skilled hacker by playing movie-like sounds while you write code.
TimothyStiles/medplum
Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.
TimothyStiles/nrpcalc
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
TimothyStiles/owncast
Take control over your live stream video by running it yourself. Streaming + chat out of the box.
TimothyStiles/pyspacelib
Noisebridge unified space stuff
TimothyStiles/simhash-eval
TimothyStiles/sqlfluff
A SQL linter and auto-formatter for Humans
TimothyStiles/svg-qr-code
Scalable Vector Graphics (SVG) encoding of QR Codes
TimothyStiles/timothystiles.github.io
my blog's cheap CDN and CMS
TimothyStiles/wiktextract
Wiktionary dump file parser and multilingual data extractor