Pinned Repositories
ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
alphafold
Open source code for AlphaFold.
AlphaFold-KUL
Setup and run AlphaFold as a Singularity container
ATAC-seq
Analysis pipeline for ATAC-seq data
bds-files-bioinformatics-data-skills
Supplementary files for my book, "Bioinformatics Data Skills"
beamer
A LaTeX class for producing presentations and slides
cdhit-web-server
computing_for_bioinformatics
TingTingShao's Repositories
TingTingShao/bds-files-bioinformatics-data-skills
Supplementary files for my book, "Bioinformatics Data Skills"
TingTingShao/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
TingTingShao/alphafold
Open source code for AlphaFold.
TingTingShao/AlphaFold-KUL
Setup and run AlphaFold as a Singularity container
TingTingShao/ATAC-seq
Analysis pipeline for ATAC-seq data
TingTingShao/beamer
A LaTeX class for producing presentations and slides
TingTingShao/DeepLearningPython
neuralnetworksanddeeplearning.com integrated scripts for Python 3.5.2 and Theano with CUDA support
TingTingShao/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
TingTingShao/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
TingTingShao/docs
TensorFlow documentation
TingTingShao/epiformer_li
The deep learning model and pre-trained model
TingTingShao/hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
TingTingShao/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
TingTingShao/introduction_to_ml_with_python
Notebooks and code for the book "Introduction to Machine Learning with Python"
TingTingShao/kanakata
a simple kana (hiragana & katakana) quiz
TingTingShao/LaWGPT
🎉 Repo for LaWGPT, Chinese-Llama tuned with Chinese Legal knowledge. 基于中文法律知识的大语言模型
TingTingShao/ldsc_li_cited
LD Score Regression (LDSC)
TingTingShao/MACS_li_cited
MACS -- Model-based Analysis of ChIP-Seq
TingTingShao/manim
Animation engine for explanatory math videos
TingTingShao/master_thesis
TingTingShao/microglia_chromatin_cell_states
TingTingShao/missingno
Missing data visualization module for Python.
TingTingShao/neural-networks-and-deep-learning
Code samples for my book "Neural Networks and Deep Learning"
TingTingShao/nicegui
Create web-based user interfaces with Python. The nice way.
TingTingShao/Optical_Flow_IBP
TingTingShao/python_de_learners_data
Repo contains the code, data and supporting documents including presentations, playbooks and additional documents to support learning
TingTingShao/scikit-image
Image processing in Python
TingTingShao/seqtk
Toolkit for processing sequences in FASTA/Q formats
TingTingShao/SnapATAC_li
Analysis Pipeline for Single Cell ATAC-seq
TingTingShao/tanitracer
Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.