Pinned Repositories
3d-printing-of-brain-regions
Goal is to arrive at a pipeline that takes an MRI scan of a human or animal brain, processes and segments it, and produces a collection of 3d printable files that clip together.
ANTs
Advanced Normalization Tools (ANTs)
asdlangoutcomebloodgexfmripls
atlasreader
Python interface for generating coordinate tables and region labels from statistical MRI images
automaticanalysis
Automatic analysis
barzilayStress
Code used to produce stress analysis results
bctpy
brain connectivity toolbox for python
BrainsForPublication
Code and documentation for the Brains for Publication proposal for the 2016 OHBM Hackathon
BRAINSTools
A suite of tools for medical image processing focused on brain analysis
dynamicnetworks
Interpret dynamic functional connectivity in brain imaging by comparing methods
TingtingBo's Repositories
TingtingBo/ANTs
Advanced Normalization Tools (ANTs)
TingtingBo/asdlangoutcomebloodgexfmripls
TingtingBo/atlasreader
Python interface for generating coordinate tables and region labels from statistical MRI images
TingtingBo/automaticanalysis
Automatic analysis
TingtingBo/bctpy
brain connectivity toolbox for python
TingtingBo/BRAINSTools
A suite of tools for medical image processing focused on brain analysis
TingtingBo/bspmview
MATLAB program for viewing 3D fMRI statistical images
TingtingBo/CBIG
TingtingBo/CNTK
Microsoft Cognitive Toolkit (CNTK), an open source deep-learning toolkit
TingtingBo/ENIGMA
ENIGMA TOOLBOX is an open-access repository for data sharing, neuroimaging analysis, and visualization of ENIGMA datasets
TingtingBo/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
TingtingBo/froudist-walsh-et-al-elife-2018
Code to reproduce the figures in Froudist-Walsh, Browning, Young, Murphy, Mars, Fleysher and Croxson, "Macro-connectomics and microstructure predict dynamic plasticity patterns in the non-human primate brain", eLife, 2018. Note that raw imaging data will be uploaded to PRIME-DE (Milham et al., Neuron, 2018) upon publication.
TingtingBo/ITK
Insight Segmentation and Registration Toolkit -- Official Repository
TingtingBo/limix
Linear mixed model for genomic analyses.
TingtingBo/maybrain
Python package for analysing and visualising brain connectome data
TingtingBo/microbiomeIrritability
collaboration with CHOP re: microbiome analysis from irritability r01
TingtingBo/MRI_Guide
This provides tutorials and scripts to help with MRI data processing and analyses
TingtingBo/NHPPipelines
Enhancements of HCP Pipelines for non-human primates
TingtingBo/nipype
Workflows and interfaces for neuroimaging packages
TingtingBo/personality-types
TingtingBo/poldracklab-antsbrainextraction
Nipype workflow implementation of antsBrainExtraction
TingtingBo/PyBP-Py-BrainPlotter-for-AAL90
Visualisation & processing of MEG data and networks on meshes. A bunch of functions, examples and a gui.
TingtingBo/scona
Code to analyse structural covariance brain networks using python.
TingtingBo/Scripts
Collection of various scripts for data analysis
TingtingBo/spider_plot
Create a spider or radar plot with individual axes.
TingtingBo/struct-lmm
TingtingBo/TemplateBuildingExample
Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!
TingtingBo/tutorials
tutorials w/ code and wikis for many basic practices in the lab
TingtingBo/vtkwrite
vtkwrite writes 3D Matlab array into VTK file format
TingtingBo/xcpEngine
Official public repository for the XCP Engine