/Deadwood-microbiome

Data pipelines for analysis of deadwood microbiome

Primary LanguageR

Scripts for the analysis of deadwood microbiome

Data analysis is published in the study

Tláskal V, Brabcová V, Větrovský T, Jomura M, López-Mondéjar R, Monteiro L M O, Saraiva J P, Human Z R, Cajthaml T, da Rocha U N, Baldrian P. Complementary roles of wood-inhabiting fungi and bacteria facilitate deadwood decomposition. mSystems 6, e01078-20, 2021 DOI: 10.1128/mSystems.01078-20

Individual data packages are summarized in the paper

Tláskal V, Brabcová V, Větrovský T, López-Mondéjar R, Monteiro L M O, Saraiva J P, da Rocha U N, Baldrian P. Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood. Scientific Data 8, 198, 2021 DOI: 10.1038/s41597-021-00987-8

The txt files in this repo contain code used for sequence data processing. R script contains workflow for amplicon data analysis.