Included is a large amount of the code used to make the figures and tables for my KU MSc thesis hand-in. The code I wrote can be found in src/main-code, the other directories in src contain scripts I did not write but imported functions from.
Missing from this repository is the pipeline CELLECT-LDSC which is available here: https://github.com/perslab/CELLECT.
Also absent is the package for calculating expression specificity, CELLEX, which is available here: https://github.com/perslab/CELLEX
This repository will be updated soon to include the exact steps taken to go from publicly available GWAS and single-cell RNA-seq data to all of the figures and results in my MSc thesis.