Tom-Jenkins
Biologist and Software Developer at the University of Exeter.
University of ExeterExeter, UK
Pinned Repositories
ViewBovis
This repository will be for source code of the ViewBovis app which is currently in development.
admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
AssemblyStatsViewer
Web application to compare genome assembly stats from the NCBI
LobsterGeneX
Web application to visualise lobster gene expression data
maerl_genomics
Data and code from Jenkins et al. (2021)
mapmixture
R package and web app for spatial visualisation of admixture on a projected map
nextflow-pipelines
Scripts for bioinformatics analysis of sequencing data
seascape_rda_tutorial
Tutorial for performing redundancy analysis
TJ-Data-Visualisation
Development of new website
utility_scripts
Scripts for population genetics analysis
Tom-Jenkins's Repositories
Tom-Jenkins/mapmixture
R package and web app for spatial visualisation of admixture on a projected map
Tom-Jenkins/admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
Tom-Jenkins/utility_scripts
Scripts for population genetics analysis
Tom-Jenkins/seascape_rda_tutorial
Tutorial for performing redundancy analysis
Tom-Jenkins/maerl_genomics
Data and code from Jenkins et al. (2021)
Tom-Jenkins/nextflow-pipelines
Scripts for bioinformatics analysis of sequencing data
Tom-Jenkins/PhD_thesis_LaTeX
LaTeX code used to write my PhD thesis
Tom-Jenkins/seafan_sdm
Data and code from Jenkins and Stevens (2022)
Tom-Jenkins/AssemblyStatsViewer
Web application to compare genome assembly stats from the NCBI
Tom-Jenkins/maerl_whole_genome_resequencing
Code and supporting data from Jenkins et al. (in revision)
Tom-Jenkins/shiny_fao_app
FAO Shiny App
Tom-Jenkins/shiny_mpa_app
Interactive MPA app created using R Shiny
Tom-Jenkins/CV
CV
Tom-Jenkins/LobsterGeneX
Web application to visualise lobster gene expression data
Tom-Jenkins/TJ-Data-Visualisation
Development of new website
Tom-Jenkins/website
Tom Jenkins website
Tom-Jenkins/barbastelle_omics_analysis
Code and supporting data from Jenkins et al. (in prep)
Tom-Jenkins/BUSCO_phylogenomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Tom-Jenkins/nephrops_rad
Code and supporting data from Jenkins et al. (2024)