Toney823
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural SciencesShenzhen, China
Pinned Repositories
AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
ALLHiC_components
Some components that speed up and reduce resource cost for original ALLHiC
Ancestral_Genome_Reconstruction
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
bioscripts
several scripts for bioinformatics
Finder
A fully automated gene annotator from RNA-Seq expression data
T2Tools
TRACKPOSON
Pipeline to detect transposable elements (TEs) insertions polymorphism
YXK_Usefull_Tools
A simple python package for the beginner of Bioinformatics
Toney823's Repositories
Toney823/YXK_Usefull_Tools
A simple python package for the beginner of Bioinformatics
Toney823/bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
Toney823/T2Tools
Toney823/TRACKPOSON
Pipeline to detect transposable elements (TEs) insertions polymorphism
Toney823/AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
Toney823/ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
Toney823/ALLHiC_components
Some components that speed up and reduce resource cost for original ALLHiC
Toney823/Ancestral_Genome_Reconstruction
Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
Toney823/bioscripts
several scripts for bioinformatics
Toney823/Finder
A fully automated gene annotator from RNA-Seq expression data
Toney823/HaplotypeTools
A toolkit for identifying recombination and recombinant genotypes
Toney823/JARVIS
JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf
Toney823/Kmer-based-Subgenome-Mapping
Toney823/learnGit
Toney823/pandas-ai
Pandas AI is a Python library that integrates generative artificial intelligence capabilities into Pandas, making dataframes conversational
Toney823/pyecharts
🎨 Python Echarts Plotting Library
Toney823/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Toney823/SE-MEI
Tools for finding mobile element insertions from single-end datasets
Toney823/SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
Toney823/Toney823
Toney823/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
Toney823/VCF2PCACluster
A new simple and efficient software to PCA and Cluster For popolation VCF File
Toney823/wgdi
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes