TrEE-TIMC/circhic

Issues

• Input data

  #84 opened 4 years ago
  0

• Warnings to be removed

  #62 opened 4 years ago
  0

• plot_circular_heatmap_size must be updated

  #61 opened 4 years ago
  1

• ax.text() is bugging when using a posy <0

  #50 opened 4 years ago
  3

• Something is wrong in set_genomic_ticklabels

  #47 opened 4 years ago
  1

• Something is wrong with plot_bands

  #46 opened 4 years ago
  0

• "lengths" is a misleading key in data dict

  #45 opened 4 years ago
  2

• slight mismatch between inner circle radius/center and raxis

  #44 opened 4 years ago
  1

• bone_r as the default colormap

  #41 opened 4 years ago
  0

• _plot_raxis must be updated

  #40 opened 4 years ago
  4

• When outer_gdis is 0, plot_hic plots nothing

  #39 opened 4 years ago
  1

• plot_hic's inner radius is wrong.

  #38 opened 4 years ago
  5

• Building a mapping between HiC indexes and (theta,r)

  #36 opened 4 years ago
  0

• Define border thickness using matplolib framework

  #35 opened 4 years ago
  0

• Add some form of user documentation

  #30 opened 4 years ago
  0

• distances must be en bp

  #27 opened 4 years ago
  1

• savefig in png format is bugging (mac OSX)

  #26 opened 4 years ago
  3

• Add interpolation='None' in ax.imshow of both circular_data and border_im

  #25 opened 4 years ago
  1

• Tick labels and label of of genomic distances do not show up on jupyter (3.7)

  #24 opened 4 years ago
  2

• Automatic location of figure legend

  #23 opened 4 years ago
  1

• fontsize is bugging in circhicfig.set_colorbar (jupyter 3.7)

  #22 opened 4 years ago
  1

• Border display depends on fig size

  #21 opened 4 years ago
  1

• ENH Add two modes for inner_gdis

  #18 opened 4 years ago
  0

• DOC the origin is set to the North of the plot and not the east!!!

  #17 opened 4 years ago
  0

• DOC make the link between examples and code on the level of methods and not whole object

  #9 opened 4 years ago
  0

• ENH Support linear chromosome.

  #5 opened 4 years ago
  0

• BUG Genomic ticks are still wrong

  #4 opened 4 years ago
  0

• ENH Allow some form of plots for genomic marks.

  #3 opened 4 years ago
  0

• MAINT Explore warnings during the creation of the circular strip from data.

  #2 opened 4 years ago
  0

• ENH add possibility of adding all the different plots to specific axes provided to each plot

  #1 opened 4 years ago
  0