Transipedia/dekupl

Conda installation problem

pitollat opened this issue · 0 comments

pitollat commented

Conda installation fails because some packages can not be found in conda channels.

Is there a typical Miniconda3 version to use instead of the latest one ?
Shall I add other conda channels ?

Here is the error messages :
conda install -n dekupl -y -m --override-channels -c transipedia -c
bioconda -c conda-forge -c https://repo.anaconda.com/pkgs/main -c
https://repo.anaconda.com/pkgs/free -c
https://repo.anaconda.com/pkgs/pro dekupl-run dekupl-annotation
dekupl-viewer
Collecting package metadata: done
Solving environment: failed

PackagesNotFoundError: The following packages are not available from
current channels:

  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-base[version='>=3.5.1,<3.5.2.0a0'] -> _r-mutex=1[build=anacondar_1]
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-circlize[version='>=0.4.5'] -> r-colorspace
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-circlize[version='>=0.4.5'] -> r-globaloptions[version='>=0.0.12']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-circlize[version='>=0.4.5'] -> r-shape -> r=3.3.1
  • dekupl-viewer -> bioconductor-complexheatmap -> r-clue -> r-cluster
  • dekupl-viewer -> bioconductor-complexheatmap -> r-getoptlong -> r-rjson
  • dekupl-viewer -> bioconductor-complexheatmap -> r-png
  • dekupl-viewer -> bioconductor-complexheatmap -> r-rcolorbrewer
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-magrittr[version='>=1.0.1']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-whisker
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-digest
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-gtable[version='>=0.1.1']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-lazyeval
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-mass
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-plyr[version='>=1.7.1'] -> r-rcpp[version='>=0.11.0']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-reshape2 -> r-stringr
    -> r-stringi[version='>=0.4.1']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-reshape2 -> r-stringr
    -> r-glue[version='>=1.2.0']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-dichromat
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-labeling
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-munsell[version='>=0.2']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-r6
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-viridislite
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble -> r-assertthat
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-cli[version='>=1.0.1'] -> r-crayon[version='>=1.3.4']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-fansi[version='>=0.4.0']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-pillar[version='>=1.3.1'] -> r-rlang[version='>=0.3.4']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-pillar[version='>=1.3.1'] -> r-utf8[version='>=1.1.4']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0'] -> r-backports
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0'] -> r-zeallot
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-tibble ->
    r-pkgconfig[version='>=2.0.2']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-mgcv -> r-matrix ->
    r-lattice
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-mgcv ->
    r-nlme[version='>=3.1_64']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-ggplot2 -> r-withr[version='>=2.0.0']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-viridis -> r-gridextra
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-class
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-diptest
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-flexmix ->
    r-modeltools[version='>=0.2_16']
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-flexmix -> r-nnet
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-kernlab
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-mclust
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-mvtnorm
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-prabclus
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-robustbase -> r-deoptimr
  • dekupl-viewer -> bioconductor-complexheatmap ->
    r-dendextend[version='>=1.0.1'] -> r-fpc -> r-trimcluster
  • dekupl-viewer -> r-calibrate
  • dekupl-viewer -> r-dt -> r-htmltools[version='>=0.3.5']
  • dekupl-viewer -> r-dt -> r-htmlwidgets[version='>=0.6'] ->
    r-jsonlite[version='>=0.9.16']
  • dekupl-viewer -> r-dt -> r-htmlwidgets[version='>=0.6'] -> r-yaml
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-httpuv[version='>=1.5.0'] -> r-bh
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-httpuv[version='>=1.5.0'] -> r-later[version='>=0.8.0']
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-httpuv[version='>=1.5.0'] -> r-promises
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-mime[version='>=0.3']
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-sourcetools
  • dekupl-viewer -> r-dt -> r-crosstalk -> r-shiny[version='>=0.11']
    -> r-xtable
  • dekupl-viewer -> r-factoextra -> r-abind
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-pbkrtest[version='>=0.4_4'] -> r-lme4[version='>=1.1.10'] -> r-boot
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-pbkrtest[version='>=0.4_4'] -> r-lme4[version='>=1.1.10'] ->
    r-minqa[version='>=1.1.15']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-pbkrtest[version='>=0.4_4'] -> r-lme4[version='>=1.1.10'] ->
    r-nloptr[version='>=1.0.4']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-pbkrtest[version='>=0.4_4'] -> r-lme4[version='>=1.1.10'] -> r-rcppeigen
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-quantreg -> r-matrixmodels
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-quantreg -> r-sparsem
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-cardata[version='>=3.0_0']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-maptools -> r-foreign[version='>=0.8']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car ->
    r-maptools -> r-sp[version='>=1.0_11']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-curl[version='>=0.6']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-data.table[version='>=1.9.8']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-haven[version='>=1.1.0'] -> r-forcats[version='>=0.2.0'] -> r-ellipsis
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-haven[version='>=1.1.0'] -> r-hms
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-haven[version='>=1.1.0'] -> r-readr[version='>=0.1.0'] -> r-clipr
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-openxlsx -> r-zip
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-readxl[version='>=0.1.1'] -> r-cellranger -> r-rematch
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-car -> r-rio ->
    r-readxl[version='>=0.1.1'] -> r-progress -> r-prettyunits
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-ellipse
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-flashclust
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-leaps
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-scatterplot3d
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-knitr ->
    r-evaluate[version='>=0.8']
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-knitr -> r-formatr
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-knitr -> r-highr
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-knitr -> r-markdown
  • dekupl-viewer -> r-factoextra -> r-factominer -> r-knitr -> r-xfun
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-cowplot
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-dplyr[version='>=0.7.1'] -> r-plogr[version='>=0.1.10']
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-dplyr[version='>=0.7.1'] -> r-tidyselect[version='>=0.2.5'] -> r-purrr
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-dplyr[version='>=0.7.1'] -> r-bindrcpp[version='>=0.2.0.9000'] ->
    r-bindr[version='>=0.1.1']
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-ggrepel
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] -> r-ggsci
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-ggsignif
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] ->
    r-polynom
  • dekupl-viewer -> r-factoextra -> r-ggpubr[version='>=0.1.5'] -> r-tidyr
  • dekupl-viewer -> r-optparse -> r-getopt[version='>=1.19']
  • dekupl-viewer -> r-shinycssloaders
  • dekupl-viewer -> r-shinydashboard
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-biobase[version='>=2.42.0,<2.43.0'] ->
    bioconductor-biocgenerics[version='>=0.28.0,<0.29.0'] ->
    r-base[version='>=3.5.1,<3.5.2.0a0'] -> _r-mutex=1[build=anacondar_1]
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-bh -> r=3.3.1
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-futile.logger
    -> r-futile.options
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-futile.logger
    -> r-lambda.r[version='>=1.1.0'] -> r-formatr
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-snow
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] ->
    bioconductor-iranges[version='>=2.16.0,<2.17.0'] ->
    bioconductor-s4vectors[version='>=0.20.0,<0.21.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-dbi
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-bit64 -> r-bit[version='>=1.1_12']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-blob[version='>=1.1.1'] -> r-prettyunits -> r-assertthat
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-blob[version='>=1.1.1'] -> r-prettyunits -> r-magrittr
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-memoise -> r-digest[version='>=0.6.3']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-pkgconfig
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-plogr[version='>=0.2.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-rcpp[version='>=0.12.7']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-rcurl -> r-bitops
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-xml
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-xtable
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] -> r-survival ->
    r-matrix -> r-lattice
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-geneplotter[version='>=1.60.0,<1.61.0'] -> r-rcolorbrewer
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genomicranges[version='>=1.34.0,<1.35.0'] ->
    bioconductor-genomeinfodb[version='>=1.18.0,<1.19.0'] ->
    bioconductor-genomeinfodbdata[version='>=1.2.0,<1.3.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-genomicranges[version='>=1.34.0,<1.35.0'] ->
    bioconductor-xvector[version='>=0.22.0,<0.23.0'] ->
    bioconductor-zlibbioc[version='>=1.28.0,<1.29.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-summarizedexperiment[version='>=1.12.0,<1.13.0'] ->
    bioconductor-delayedarray[version='>=0.8.0,<0.9.0'] -> r-matrixstats
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-gtable[version='>=0.1.1']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-lazyeval
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-mass
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-plyr[version='>=1.7.1']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-reshape2 -> r-stringr -> r-stringi[version='>=0.4.1']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-reshape2 -> r-stringr -> r-glue[version='>=1.2.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-scales[version='>=0.4.1'] -> r-dichromat
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-scales[version='>=0.4.1'] -> r-labeling
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-scales[version='>=0.4.1'] -> r-munsell[version='>=0.2'] -> r-colorspace
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-scales[version='>=0.4.1'] -> r-r6
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-scales[version='>=0.4.1'] -> r-viridislite
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-cli[version='>=1.0.1'] -> r-crayon[version='>=1.3.4']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-fansi[version='>=0.4.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-pillar[version='>=1.3.1'] -> r-rlang[version='>=0.3.4']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-pillar[version='>=1.3.1'] -> r-utf8[version='>=1.1.4']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0']
    -> r-backports
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-tibble -> r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0']
    -> r-zeallot
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-mgcv -> r-nlme[version='>=3.1_64']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-ggplot2
    -> r-withr[version='>=2.0.0']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-acepack
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-base64enc
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-cluster
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-data.table
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-foreign
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-formula
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-gridextra
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-checkmate
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmltools
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmlwidgets ->
    r-jsonlite[version='>=0.9.16']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmlwidgets -> r-yaml
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] ->
    r-evaluate[version='>=0.8']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] -> r-highr
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] ->
    r-markdown -> r-mime[version='>=0.3']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] -> r-xfun
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-rstudioapi[version='>=0.6']
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-latticeextra
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-nnet
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-rpart
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-hmisc ->
    r-viridis
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-locfit
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    r-rcpparmadillo
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] ->
    bioconductor-tximport
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-getopt
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-gplots
    -> r-catools
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-gplots
    -> r-gdata -> r-gtools
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-gplots
    -> r-kernsmooth
  • dekupl-run -> bioconductor-deseq2[version='>=1.18.1'] -> r-rjson
  • dekupl-run -> bioconductor-edger ->
    bioconductor-limma[version='>=3.40.0,<3.41.0']
  • dekupl-run -> r-doparallel -> r-foreach[version='>=1.2.0'] ->
    r-codetools
  • dekupl-run -> r-doparallel -> r-foreach[version='>=1.2.0'] ->
    r-iterators
  • dekupl-run -> r-pheatmap
  • dekupl-run -> rpy2 -> r-dbplyr -> r-dplyr[version='>=0.7.5'] ->
    r-tidyselect[version='>=0.2.5'] -> r-purrr
  • dekupl-run -> rpy2 -> r-dbplyr -> r-dplyr[version='>=0.7.5'] ->
    r-bindrcpp[version='>=0.2.0.9000'] -> r-bindr[version='>=0.1.1']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-biobase[version='>=2.42.0,<2.43.0'] ->
    bioconductor-biocgenerics[version='>=0.28.0,<0.29.0'] ->
    r-base[version='>=3.5.1,<3.5.2.0a0'] -> _r-mutex=1[build=anacondar_1]
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-bh -> r=3.3.1
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-futile.logger
    -> r-futile.options
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-futile.logger
    -> r-lambda.r[version='>=1.1.0'] -> r-formatr
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-biocparallel[version='>=1.16.0,<1.17.0'] -> r-snow
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] ->
    bioconductor-iranges[version='>=2.16.0,<2.17.0'] ->
    bioconductor-s4vectors[version='>=0.20.0,<0.21.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-dbi
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-bit64 -> r-bit[version='>=1.1_12']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-blob[version='>=1.1.1'] -> r-prettyunits -> r-assertthat
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-blob[version='>=1.1.1'] -> r-prettyunits -> r-magrittr
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-memoise -> r-digest[version='>=0.6.3']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-pkgconfig
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-plogr[version='>=0.2.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] ->
    bioconductor-annotationdbi[version='>=1.44.0,<1.45.0'] -> r-rsqlite ->
    r-rcpp[version='>=0.12.7']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-rcurl -> r-bitops
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-xml
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] ->
    bioconductor-annotate[version='>=1.60.0,<1.61.0'] -> r-xtable
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genefilter[version='>=1.64.0,<1.65.0'] -> r-survival ->
    r-matrix -> r-lattice
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-geneplotter[version='>=1.60.0,<1.61.0'] -> r-rcolorbrewer
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicranges[version='>=1.34.0,<1.35.0'] ->
    bioconductor-genomeinfodb[version='>=1.18.0,<1.19.0'] ->
    bioconductor-genomeinfodbdata[version='>=1.2.0,<1.3.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicranges[version='>=1.34.0,<1.35.0'] ->
    bioconductor-xvector[version='>=0.22.0,<0.23.0'] ->
    bioconductor-zlibbioc[version='>=1.28.0,<1.29.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-summarizedexperiment[version='>=1.12.0,<1.13.0'] ->
    bioconductor-delayedarray[version='>=0.8.0,<0.9.0'] -> r-matrixstats
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-gtable[version='>=0.1.1']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-lazyeval
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-mass
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-plyr[version='>=1.7.1']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-reshape2
    -> r-stringr -> r-stringi[version='>=0.4.1']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-reshape2
    -> r-stringr -> r-glue[version='>=1.2.0']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-dichromat
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-labeling
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-munsell[version='>=0.2'] -> r-colorspace
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-r6
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-scales[version='>=0.4.1'] -> r-viridislite
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-cli[version='>=1.0.1'] -> r-crayon[version='>=1.3.4']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-fansi[version='>=0.4.0']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-pillar[version='>=1.3.1'] -> r-rlang[version='>=0.3.4']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-pillar[version='>=1.3.1'] -> r-utf8[version='>=1.1.4']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0'] -> r-backports
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-tibble
    -> r-pillar[version='>=1.3.1'] -> r-vctrs[version='>=0.1.0'] -> r-zeallot
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 -> r-mgcv ->
    r-nlme[version='>=3.1_64']
  • dekupl-annotation -> bioconductor-deseq2 -> r-ggplot2 ->
    r-withr[version='>=2.0.0']
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-acepack
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-base64enc
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-cluster
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-data.table
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-foreign
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-formula
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-gridextra
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-checkmate
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmltools
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmlwidgets ->
    r-jsonlite[version='>=0.9.16']
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-htmlwidgets -> r-yaml
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] ->
    r-evaluate[version='>=0.8']
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] -> r-highr
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] ->
    r-markdown -> r-mime[version='>=0.3']
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-knitr[version='>=1.6'] -> r-xfun
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc ->
    r-htmltable[version='>=1.11.0'] -> r-rstudioapi[version='>=0.6']
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-latticeextra
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-nnet
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-rpart
  • dekupl-annotation -> bioconductor-deseq2 -> r-hmisc -> r-viridis
  • dekupl-annotation -> bioconductor-deseq2 -> r-locfit
  • dekupl-annotation -> bioconductor-deseq2 -> r-rcpparmadillo
  • dekupl-annotation -> bioconductor-deseq2 -> bioconductor-tximport
  • dekupl-annotation -> bioconductor-deseq2 -> r-getopt
  • dekupl-annotation -> bioconductor-deseq2 -> r-gplots -> r-catools
  • dekupl-annotation -> bioconductor-deseq2 -> r-gplots -> r-gdata ->
    r-gtools
  • dekupl-annotation -> bioconductor-deseq2 -> r-gplots -> r-kernsmooth
  • dekupl-annotation -> bioconductor-deseq2 -> r-rjson
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures ->
    bioconductor-biomart[version='>=2.38.0,<2.39.0'] -> r-httr ->
    r-curl[version='>=0.9.1']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures ->
    bioconductor-biomart[version='>=2.38.0,<2.39.0'] -> r-httr ->
    r-openssl[version='>=0.8'] -> r-askpass -> r-sys[version='>=2.1']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures ->
    bioconductor-biomart[version='>=2.38.0,<2.39.0'] -> r-progress -> r-hms
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures ->
    bioconductor-biostrings[version='>=2.50.0,<2.51.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures ->
    bioconductor-rtracklayer[version='>=1.42.0,<1.43.0'] ->
    bioconductor-genomicalignments[version='>=1.18.0,<1.19.0'] ->
    bioconductor-rsamtools[version='>=1.34.0,<1.35.0']
  • dekupl-annotation -> bioconductor-deseq2 ->
    bioconductor-genomicfeatures -> r-rmysql

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