rna-seq-data
There are 37 repositories under rna-seq-data topic.
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
federicomarini/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
federicomarini/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
GoekeLab/proActiv
Estimation of Promoter Activity from RNA-Seq data
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Transipedia/dekupl
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
egaffo/CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
theislab/MetaMap
The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.
knowmics-lab/RNAdetector
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
immunogenomics/amp_phase1_ra_viewer
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
MG-RAST/myM5NR
M5NRv2 -- non-redundant protein and rRNA database integration
sing-group/dewe
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
tAndreani/RNAseQTL
Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing
wilkinsonlab/epigenomics_pipeline
Epigenomics workflow system for the semi-automated analysis of NGS data
adeschen/SignatureHeatmap
R package to create heatmaps using signature gene list and transcriptomic data
bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
elizabethpermina/RNA-Seq-tutorial-Otago-2017
RNA-Seq tutorial materials - slides, training data, code lines
fomightez/simulated_data
A repository for code that generates various simulated data.
keslingmj/RNASeq
Analyses of RNA-Seq Data
kevincjnixon/BinfTools
Useful R functions for Multi-omics analyses
kjohnsen/MMAPPR2data
Sample Data for MMAPPR2
Marcrockhat/imprintia
This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.
mchialva/RNA2M
Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)
sivkri/miRNASeq-DE-Analysis-QC
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
SoniaRuiz/rytenlab-website
Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).
williamjeong2/snakemake_RNA-seq
A repository for RNA-seq workflow
Hemangini09/RNA-seq-data-analysis-with-DESeq2
Performing RNA-seq data analysis with DESeq2 package of bioconductor
Hemangini09/RNA-seq-data-analysis-with-edgeR-
Perform RNA-seq data analysis with edgeR package of bioconductor
niqolla/ieo_RNAseq_project
eproduciton of a publication regarding gene expression in different phases of lactation in humans
jacobwindsor/tmerge
Build highly accurate transcripts from long-read RNA data