nuno-agostinho/psichomics

Issues

• GUI Reproducible crash - Error in eBayes: fit is not a valid MArrayLM object

  #466 opened 4 months ago by alexvnesta
  0

• unable to download files using loadFirebrowseData

  #463 opened a year ago by atankka
  1

• Samples Column in Splicing Results

  #461 opened 2 years ago by GuoLabUCSD
  2

• I couldn't download data from the TCGA database. How do I need to fix it？

  #460 opened 2 years ago by geng-lee
  2

• Suggestions for QC?

  #450 opened 2 years ago by ryanyord
  2

• No significant event

  #419 opened 4 years ago by Elle-hu
  1

• Warning: Correlation analyses already performed [in "Correlation analyses"]

  #436 opened 3 years ago by SaraL-GH
  1

• psichomics() Error in xj[i] : invalid subscript type 'list'

  #435 opened 3 years ago by Ni-Ar
  3

• importing rMATS dPSI

  #433 opened 3 years ago by herber4
  1

• Visual interface not starting with new R v.4.1.1

  #432 opened 3 years ago by SaraL-GH
  2

• Fix bug to allow folder selection in Windows

  #369 opened 3 years ago by nuno-agostinho
  1

• confused about results

  #429 opened 3 years ago by nick-webster
  6

• Translation among annotations

  #420 opened 3 years ago by MiqG
  5

• Install and start running

  #423 opened 4 years ago by RFTHK
  4

• NULL genes when using custom annotations

  #416 opened 4 years ago by Elle-hu
  7

• Import output from Whippet into Psichomics

  #405 opened 5 years ago by hegu2692
  2

• the rownames of PSI generated using the custom annotation doesn't contain gene names

  #407 opened 4 years ago by YingziZhang-github
  3

• Quick multiple ANOVA testing using a matrix as input

  #410 opened 4 years ago by nuno-agostinho
  0

• 'parseMatsAnnotation' requires "AFE" and "ALE" txt, which are not produced by rmats

  #406 opened 5 years ago by YingziZhang-github
  2

• Keep colours when loading groups from a file

  #355 opened 5 years ago by nuno-agostinho
  1

• Copy-edit exported function documentation

  #386 opened 5 years ago by nuno-agostinho
  0

• Use `options()` to set package-wide options

  #398 opened 5 years ago by nuno-agostinho
  0

• Use ellipsis package?

  #395 opened 5 years ago by nuno-agostinho
  0

• junction quantification data not loading

  #385 opened 6 years ago by MikeHH01
  3

• R.utils::evalWithTimeout() -> withTimeout()

  #383 opened 6 years ago by HenrikBengtsson
  5

• Include link to explain cancer staging

  #382 opened 6 years ago by nuno-agostinho
  0

• Export individual event differential statistics as table

  #381 opened 6 years ago by nuno-agostinho
  0

• Gene expression plots

  #368 opened 6 years ago by nuno-agostinho
  1

• Add/load new datasets in data viewer for selected data category

  #371 opened 6 years ago by nuno-agostinho
  0

• Add number of genes to the PSI table summary

  #374 opened 6 years ago by nuno-agostinho
  0

• Save/load whole data session

  #375 opened 6 years ago by nuno-agostinho
  0

• Allow to remove groups used for set operations

  #378 opened 6 years ago by nuno-agostinho
  0

• Add colour legend to AS and gene correlation analyses

  #380 opened 6 years ago by nuno-agostinho
  0

• Create groups based on the individuals within survival cutoffs

  #379 opened 6 years ago by nuno-agostinho
  0

• Calculate survival for a gene based on samples with highest vs lowest top expression

  #377 opened 6 years ago by nuno-agostinho
  0

• Add settings as attributes so they are universally accessible on CLI/GUI

  #376 opened 6 years ago by nuno-agostinho
  0

• Perform dimensionality reduction with matrixes of one column/row crashes the app

  #373 opened 6 years ago by nuno-agostinho
  0

• Do not automatically update data table viewer based on selected columns

  #372 opened 6 years ago by nuno-agostinho
  0

• Remove filepath from certain field input elements

  #370 opened 6 years ago by nuno-agostinho
  0

• Wrong filename when saving tables of differential expression analyses

  #350 opened 6 years ago by nuno-agostinho
  1

• Remove non-exported functions from the reference manual

  #367 opened 6 years ago by nuno-agostinho
  1

• Replace "patient" with "subject"

  #364 opened 6 years ago by nuno-agostinho
  0

• Error when downloading and extracting only a TCGA data file type

  #363 opened 6 years ago by nuno-agostinho
  0

• Disallow to select samples based on X if X is unavailable

  #358 opened 7 years ago by nuno-agostinho
  0

• Add link to gene info in differential analyses tables

  #357 opened 7 years ago by nuno-agostinho
  0

• Alert about status after loading groups from file

  #354 opened 7 years ago by nuno-agostinho
  0

• Warn when using normal samples in survival analysis

  #353 opened 7 years ago by nuno-agostinho
  0

• Infinite loop occurs when psichomics is open for a while

  #352 opened 7 years ago by nuno-agostinho
  0

• Issues with rug plots when exporting density plots

  #351 opened 7 years ago by nuno-agostinho
  0

• Deprecate global AS event select element?

  #349 opened 7 years ago by nuno-agostinho
  0