differential-gene-expression
There are 54 repositories under differential-gene-expression topic.
nanoporetech/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
NBISweden/workshop-RNAseq
Workshop • Analysis of RNA-seq data
xzhoulab/iDEA
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
DeplanckeLab/ASAP
ASAP : Automated Single-cell Analysis Pipeline
myles-lewis/glmmSeq
Gene-level general linear mixed model
wdecoster/DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
Kuanhao-Chao/RNASeqR
📊 An R package of RNA-seq workflow
cemalley/scRNASeq-bulkRNASeq
single cell and bulk RNASeq analysis scripts
pblumenkamp/GenExVis
An application for exploring and visualizing differential gene expression data created with DESeq2
csquires/dci
Code and figures for the Differential Causal Inference (DCI) algorithm
kpatel427/DE_analysis
Scripts to run differential expression analysis using DESeq2 package
pblumenkamp/Curare
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
slowkow/fibrotime
:tangerine: View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.
breimanntools/xomics
Python framework for explainable omics analysis
GrosseLab/VipeR_HIF1alpha
Viper is a Snakemake workflow, aimed at performing the RNA-seq workflow of the paper 'Causes and consequences of a glutamine induced normoxic HIF1 activity for the tumor metabolism', Kappler et al. (2019) in a reproducible and automated manner
snaketron/IgGeneUsage
Comparison of gene usage in immune repertoires under different biological conditions
ben-laufer/RNA-seq
RNA-seq alignment and analysis pipeline
DISC-IISR/RNAseqAnalysis
The package RNAseqAnalysis does the complete analysis of RNA seq data starting from raw reads. It provides the user with differnt functions like generation of qc report, filtering, assembly and GO-term annotation, differential expression analysis and heatmap generation, and Alternative splicing-site prediction
labsyspharm/dubportal
An integrative resource for deubiquitinating enzymes (DUBs) served at https://labsyspharm.github.io/dubportal
mppl1/RNAseq_preprocessing
These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
TCP-Lab/bioTEA
bioTEA - A user friendly tool to perform transcript expression analysis
viktormiok/TempOseq_CarcinoChemMCF-7
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
viktormiok/tigaR
Temporal Integrative Genomics Analysis in R
csoderlund/TCW
Analysis of single and comparative transcriptomes
GrosseLab/BGSC
Bayesian Gene Selection Criterion (BGSC) approach
JackXu2333/rseAnalysis
An R package: RNA structure and Expression analysis
sbg/GENAVi
Example R Shiny app demonstrating Seven Bridges Platform integration via OAuth2.
YogiOnBioinformatics/Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data
Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexamethasone treatment data set and incorporated Machine Learning into project.
BenaroyaResearch/SPresnell_GSE147507
GSE147507 SARS-Cov-2 Dataset from Mt. Sinai
bio2bel/adeptus
Convert differential gene expression signatures for diseases from ADEPTUS to BEL
cankocagil/BioStatistics
Differential Gene Expression, Phylogenetic tree, Sequence Alignments, Biostatistics, Bioinformatic
JackXu2333/Reproducibility_Analysis_on_GIT
Reproducibility Analysis on Genomic Impact Transformer (GIT)
kashiff007/RNA-seq-Pipeline-Under-Construction-
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
meeranhussain/RNASeq_DEGseq_Snakemake_NO-REPLICATES
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
rohan-b-84/dge_analysis_using_DESeq2
Differential Gene Expression analysis in R using DESeq2