herber4

Pinned Repositories

DaPars2
Dynamics analysis of Alternative PolyAdenylation from RNA-seq
Language:Python47 0 2522
RNAFramework
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
Language:Perl28 4 6311
SHAPEwarp
SHAPE-guided RNA structural homology search
Language:Rust8 1 70
Adv_Med_Bioinformatics_Lesson
This repo contains a lesson plan created for as an assignment for Advanced Medical Bioinformatics @ Clemson 040623
Language:R30
ARC_in_IGV
This repo contains a tutorial for plotting RNA structure arc diagrams in IGV
Language:Shell20
Committee_Meeting_Dec_2022
Language:R0 1 00
NGS_Formats_QC
Language:Shell10
Quant_Seq_DaPars2
Analysis of alternative polyadenylation from QuantSeq Rev data with DaPars2
Language:R00
TE_DEG
This repo contains tutorial for quantifying expression of transposable elements from bulk RNA-seq experiments.
Language:R20
ViennaRNA
The ViennaRNA Package
Language:C289 19 21377

herber4's Repositories

herber4/Adv_Med_Bioinformatics_Lesson
This repo contains a lesson plan created for as an assignment for Advanced Medical Bioinformatics @ Clemson 040623
Language:R30
herber4/ARC_in_IGV
This repo contains a tutorial for plotting RNA structure arc diagrams in IGV
Language:Shell20
herber4/TE_DEG
This repo contains tutorial for quantifying expression of transposable elements from bulk RNA-seq experiments.
Language:R20
herber4/NGS_Formats_QC
Language:Shell10
herber4/Committee_Meeting_Dec_2022
Language:R0 1 00
herber4/Quant_Seq_DaPars2
Analysis of alternative polyadenylation from QuantSeq Rev data with DaPars2
Language:R00