herber4's Stars
tidyomics/plyranges
A grammar of genomic data transformation
Xinglab/rmats-turbo
RitchieLabIGH/IRFinder
vshanka23/snakemake_rnaseq
cxli233/SimpleTidy_GeneCoEx
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
herber4/TE_DEG
This repo contains tutorial for quantifying expression of transposable elements from bulk RNA-seq experiments.
herber4/Adv_Med_Bioinformatics_Lesson
This repo contains a lesson plan created for as an assignment for Advanced Medical Bioinformatics @ Clemson 040623
sheynkman-lab/splice-event-to-isoform-pipeline
Shay's splice event to isoform integration pipeline
splicebox/MntJULiP
Comprehensive and scalable differential splicing analyses
lh3/miniprot
Align proteins to genomes with splicing and frameshift
huang-sh/astk
Alternative Splicing ToolKit
gtonkinhill/panstripe
post processing of bacterial pangenome gene presence/absence matrices
ouyang-lab/Riprap
Riprap Predict RNA structural disruptions induced by single nucleotide variants
splicebox/PsiCLASS
Simultaneous multi-sample transcript assembler for RNA-seq data
gersteinlab/RADAR
RADAR source code
davidliwei/rnaseqmut
RNA-Seq Mutation Detection
brennanpincardiff/drawProteins
Creating package to draw proteins from Uniprot API
cramerlab/Efficient-RNA-polymerase-II-pause-release-requires-U2-snRNP-function_2021
Caizzi, Monteiro-Martins (2021)
ChristopherWilks/snaptron
fast webservices based query tool for large sets of genomic features
ratschlab/pancanatlas_code_public
Public repository containing research code for the TCGA PanCanAtlas Splicing project
jcoliver/learn-r
A suite of lessons for learning the R programming language
RajLabMSSM/leafcutter-pipeline
Differential splicing and visualisation pipeline for the Raj lab
guigolab/ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
cdeboever3/TCGA-1
Forked version of the code for theandygross's paper so I can use some of the processing code.
cdeboever3/sj2psi
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
cdeboever3/deboever-sf3b1-2015
Code for reproducing SF3B1 study.
cdeboever3/cdpybio
Various bioinformatics scripts that don't need their own repositories.
arq5x/nanopore-scripts
Various scripts and recipes for working with nanopore data
oushujun/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
thomasp85/FindMyFriends
Fast alignment-free pangenome creation and exploration