herber4

herber4's Stars

• tidyomics/plyranges

  A grammar of genomic data transformation

  Language:R13719

• Xinglab/rmats-turbo

  Language:C++21753

• RitchieLabIGH/IRFinder

  Language:C++1310

• vshanka23/snakemake_rnaseq

  Language:HTML3

• cxli233/SimpleTidy_GeneCoEx

  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

  18225

• herber4/TE_DEG

  This repo contains tutorial for quantifying expression of transposable elements from bulk RNA-seq experiments.

  Language:R2

• herber4/Adv_Med_Bioinformatics_Lesson

  This repo contains a lesson plan created for as an assignment for Advanced Medical Bioinformatics @ Clemson 040623

  Language:R3

• sheynkman-lab/splice-event-to-isoform-pipeline

  Shay's splice event to isoform integration pipeline

  Language:Python31

• splicebox/MntJULiP

  Comprehensive and scalable differential splicing analyses

  Language:C132

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C31517

• huang-sh/astk

  Alternative Splicing ToolKit

  Language:Python7

• gtonkinhill/panstripe

  post processing of bacterial pangenome gene presence/absence matrices

  Language:R506

• ouyang-lab/Riprap

  Riprap Predict RNA structural disruptions induced by single nucleotide variants

  1

• splicebox/PsiCLASS

  Simultaneous multi-sample transcript assembler for RNA-seq data

  Language:C164

• gersteinlab/RADAR

  RADAR source code

  Language:Python42

• davidliwei/rnaseqmut

  RNA-Seq Mutation Detection

  Language:C++289

• brennanpincardiff/drawProteins

  Creating package to draw proteins from Uniprot API

  Language:R3318

• cramerlab/Efficient-RNA-polymerase-II-pause-release-requires-U2-snRNP-function_2021

  Caizzi, Monteiro-Martins (2021)

  Language:R62

• ChristopherWilks/snaptron

  fast webservices based query tool for large sets of genomic features

  Language:Python257

• ratschlab/pancanatlas_code_public

  Public repository containing research code for the TCGA PanCanAtlas Splicing project

  Language:Python4116

• jcoliver/learn-r

  A suite of lessons for learning the R programming language

  Language:HTML4210

• RajLabMSSM/leafcutter-pipeline

  Differential splicing and visualisation pipeline for the Raj lab

  Language:Python24

• guigolab/ggsashimi

  Command-line tool for the visualization of splicing events across multiple samples

  Language:Python11943

• cdeboever3/TCGA-1

  Forked version of the code for theandygross's paper so I can use some of the processing code.

  Language:Python1

• cdeboever3/sj2psi

  Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores

  Language:Python1

• cdeboever3/deboever-sf3b1-2015

  Code for reproducing SF3B1 study.

  Language:Python63

• cdeboever3/cdpybio

  Various bioinformatics scripts that don't need their own repositories.

  Language:Python21

• arq5x/nanopore-scripts

  Various scripts and recipes for working with nanopore data

  Language:Python3415

• oushujun/LTR_retriever

  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

  Language:Perl17940

• thomasp85/FindMyFriends

  Fast alignment-free pangenome creation and exploration

  Language:R276