dincarnato/RNAFramework
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
PerlGPL-3.0
Issues
- 10
rf-fold - 1 folding failed
#65 opened by laure-g - 2
- 18
Issue with RNAFramework installation
#63 opened by Frappadoo - 15
- 1
- 4
parsecigar line #1158 in rf-count
#58 opened by reamesb - 1
BAM ignored
#61 opened by physnano - 16
rf-count multiprocessing
#18 opened by coffeebond - 5
rf-rctools stats
#60 opened by light0112 - 2
rc file to mm file
#59 opened by Asperatus22 - 1
[Bug] Dockerfile build failing
#56 opened by kenibrewer - 5
- 1
Permission denied for group
#54 opened by Asperatus22 - 2
rf-correlate
#53 opened by Shuang1248 - 12
rf-map&rf-count
#52 opened by Shuang1248 - 13
rf-wiggle outputs ratios greater than 1.
#50 opened by mohamedbahru - 5
- 3
- 1
Multithreading cut adapt?
#48 opened by herber4 - 3
- 6
- 4
Shannon entropy
#47 opened by Asperatus22 - 5
Mutation counts from secondary alignments?
#44 opened by physnano - 5
Question about RNAFramework rf-rctools view
#46 opened by MeganSylvia - 3
- 2
rf_count frequencies folder
#43 opened by dfporter - 2
rf-count-genome: mutations by class
#42 opened by physnano - 3
--only-mut issues
#40 opened by catherine-douds - 9
Empty extracted .rc file
#41 opened by physnano - 4
-smp use in rf-fold
#33 opened by Asperatus22 - 14
shapemapper2 comparison
#39 opened by catherine-douds - 7
Rf -fold does not work with RNA structure
#38 opened by Frappadoo - 0
- 5
minimap2 BAM compatibility? - Undefined value as an ARRAY reference : Line 614
#34 opened by physnano - 2
no output with rf_compare
#35 opened by Asperatus22 - 4
Experiencing trouble with rf-rctools merge
#29 opened by Asperatus22 - 3
RNAFramework inside of conda environments?
#28 opened by Kobie-Kirven - 4
Could we use STAR for mapping?
#27 opened by dinktnwo - 2
rf-duplex change /usr/bin/perl
#26 opened by james-vincent - 5
Splicing bug when running rf-json2rc module
#25 opened by anaveira4 - 8
1 folding failed
#24 opened by liangyi521 - 0
Question about rf-count-genome
#23 opened by ToshiDK - 1
rf-json2rc --extend parameter omits terminal nucleotide of reference sequence
#22 opened by nickforino - 2
- 8
Oddities with reference coverage
#20 opened by A-N-Other - 6
Mutation rate stats and per base coverage
#19 opened by aichilizi - 3
rf-norm won't pick up configuration file if -c option is not the first one that is specified
#17 opened by coffeebond - 4
Merge mutation map (MM) files?
#16 opened by nickforino - 0
Containerized version?
#15 opened by reklar - 7