kenibrewer
CompBio Data Scientist and Engineer Making bio-bits go *brrrr*
@SeqeraLabsSan Francisco, CA
Pinned Repositories
dimpl
DIMPL: Discovery of Intergenic Motifs PipeLine
pycytominer
Python package for processing image-based profiling data
authlib
The ultimate Python library in building OAuth, OpenID Connect clients and servers. JWS,JWE,JWK,JWA,JWT included.
aws-nf-tower-terraform
bioconda-recipes
Conda recipes for the bioconda channel.
biopython
Official git repository for Biopython (originally converted from CVS)
codonw-slim
A slimmed down fork of CodonW with python bindings
conda-smithy
The tool for managing conda-forge feedstocks.
ORFeus
simplenextflow
A simpler nextflow project template based of nf-core
kenibrewer's Repositories
kenibrewer/ORFeus
kenibrewer/simplenextflow
A simpler nextflow project template based of nf-core
kenibrewer/authlib
The ultimate Python library in building OAuth, OpenID Connect clients and servers. JWS,JWE,JWK,JWA,JWT included.
kenibrewer/aws-nf-tower-terraform
kenibrewer/bioconda-recipes
Conda recipes for the bioconda channel.
kenibrewer/biopython
Official git repository for Biopython (originally converted from CVS)
kenibrewer/codonw-slim
A slimmed down fork of CodonW with python bindings
kenibrewer/conda-smithy
The tool for managing conda-forge feedstocks.
kenibrewer/www.kenbrewer.com
Personal website of Ken Brewer
kenibrewer/cookiecutter-poetry
A modern cookiecutter template for Python projects that use Poetry for dependency management
kenibrewer/copier
Library and command-line utility for rendering projects templates.
kenibrewer/copier-nextflow
A modular best-practices Nextflow template built using Copier
kenibrewer/CytoTable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
kenibrewer/cz-conventional-gitmoji
A commitizen plugin that combines gitmoji and conventional commits.
kenibrewer/dotfiles
Bootstrap your Ubuntu in a single command!
kenibrewer/Getting-Started-Terraform
Exercise files for Terraform Pluralsight course
kenibrewer/gpt4free
decentralising the Ai Industry, just some language model api's...
kenibrewer/nf-test
Simple test framework for Nextflow pipelines
kenibrewer/pandas-ai
Pandas AI is a Python library that integrates generative artificial intelligence capabilities into Pandas, making dataframes conversational
kenibrewer/platform-docs
https://platform-docs.opentargets.org/
kenibrewer/PyComplexHeatmap
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
kenibrewer/pycytominer
cytominer python package
kenibrewer/pycytominer-feedstock
A conda-smithy repository for pycytominer.
kenibrewer/RFdiffusion
Code for running RFdiffusion
kenibrewer/RNAFramework
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
kenibrewer/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
kenibrewer/shapeseq
[DRAFT] Work-in-progress Nextflow pipeline for processing Shapeseq data based off RNAFramework
kenibrewer/tools
Python package with helper tools for the nf-core community.
kenibrewer/vscode-extensionpack
A VSCode extension pack for nf-core developers.
kenibrewer/website
Nextflow public web site