TravisWheelerLab/polyA

Issues

• substitution matrices not to be included in releases

  #92 opened 2 years ago by jackroddy
  0

• Minimum python version

  #79 opened 3 years ago by jebrosen
  0

• Account for alignment tool used outside of shell script

  #73 opened 4 years ago by Audreym98
  0

• Empty SODA and heat map files for single alignments

  #37 opened 4 years ago by glesica
  0

• Identify artificial TE tool for benchmarking

  #8 opened 4 years ago by glesica
  0

• Implement performance benchmarking framework

  #5 opened 4 years ago by glesica
  0

• Identify work items based on goals from Travis

  #11 opened 4 years ago by glesica
  0

• Get `fill_prob_matrix` tests passing

  #4 opened 5 years ago by glesica
  1

• Consider different score sources

  #13 opened 4 years ago by glesica
  1

• Map Perl functions / globals into the Python architecture

  #12 opened 4 years ago by glesica
  0

• Test adjudication examples from Robert

  #7 opened 4 years ago by glesica
  0

• Benchmark, test for false positives, etc

  #9 opened 4 years ago by glesica
  0

• Ensure harmonization between Perl and Python after benchmarking fixes

  #10 opened 4 years ago by glesica
  0

• Write usage instructions in readme

  #2 opened 4 years ago by glesica
  0

• Decide on a license and add it

  #3 opened 4 years ago by glesica
  0

• Lay out command line interface

  #6 opened 4 years ago by glesica
  0

• Write "about" section for readme

  #1 opened 4 years ago by glesica
  0

• Choose input and output formats

  #14 opened 4 years ago by glesica
  1

• add in running esl-scorematrix

  #15 opened 4 years ago by kmcarey
  0