A FASTX sequence tool written in Rust.
Usage: seqr [OPTIONS] [COMMAND]
Commands:
grep Search for sequences matching a pattern
count Count
help Print this message or the help of the given subcommand(s)
Options:
-d, --debug
-h, --help Print help
The grep command:
Usage: seqr grep [OPTIONS] <PATTERN> [FILE]...
Arguments:
<PATTERN> Pattern
[FILE]... Input file(s) [default: -]
Options:
-f, --outfmt <OUTFMT> Output format [possible values: fasta, fastq]
-o, --output <OUTPUT> Output file
-p, --part <PART> Search record part [default: head]
[possible values: head, seq, qual]
-v, --invert-match Invert match
-i, --insensitive Case-insensitive search
-h, --help Print help
-V, --version Print version
The count command:
Usage: seqr count [FILE]...
Arguments:
[FILE]... Input file(s) [default: -]
Options:
-h, --help Print help
-V, --version Print version
Ken Youens-Clark kyclark@arizona.edu