TrinityCTAT/ctat-mutations
Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
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Issues
- 4
PctExtPos
#138 opened - 1
Annotate CRAVAT error
#137 opened - 8
Running scRNAseq pipeline with fastq files
#136 opened - 38
Not able to run CTAT Mutations
#135 opened - 10
mutation-lib supplement for GRCm39
#134 opened - 0
- 1
dbSNP frequence question
#131 opened - 5
Missing path to CTAT_GENOME_LIB
#130 opened - 1
Issue with BQSR maximum cycle value
#129 opened - 5
k8 missing from Container
#128 opened - 0
- 18
Annotate CRAVAT error
#126 opened - 3
zipfile.BadZipFile: File is not a zip file
#124 opened - 8
Annotating VCF at BLAT ED
#123 opened - 5
Not enough memory for BAM sorting
#122 opened - 12
Annotate Cravat step can not read file
#121 opened - 0
Do I need spliced fastq?
#120 opened - 5
AWS EC2 + docker and issue of cromwell or STAR
#119 opened - 9
HaplotypeCaller - Intervals option
#118 opened - 40
- 3
- 12
subprocess.CalledProcessError
#110 opened - 2
- 5
Localization via hard link has failed:
#108 opened - 17
RNAEditing Analysis
#107 opened - 4
- 4
- 5
ctat-mutations-WorkflowFailedState
#104 opened - 5
internet connection error
#103 opened - 2
question about the outputs
#102 opened - 5
errors in mutation lib integration
#101 opened - 2
Interoperability between CTAT tools
#100 opened - 1
- 0
information about SNV annotation
#97 opened - 1
REDIportal V2.0 update
#96 opened - 8
error on testing set
#94 opened - 2
- 1
Terra configuration
#92 opened - 8
EXITING: FATAL INPUT ERROR: unrecognized parameter name "genomeType" in input "genomeParameters.txt"
#91 opened - 0
- 3
EXITING: FATAL INPUT ERROR: unrecognized parameter name "genomeType" in input "genomeParameters.txt"
#87 opened - 10
- 5
Mutations in DEMO data not found
#81 opened - 5
- 4
create_report: command not found
#61 opened - 3
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xe9 in position 6346: invalid continuation byte
#60 opened - 9
- 7
Mutation expected not found
#56 opened - 1
needs R installed in Docker for boosting
#55 opened - 0
include PoN
#54 opened