Alinea.Adel

Authors : C. Fournier, C. Pradal, B. Andrieu

Contributors :

M Abichou (wheat parameteristion, documentation, plantgen),
C Chambon (plantgen, documentation, povray, fit, io widgets)

Institutes : INRA, CIRAD

Status : R and Python package (+ L-system)

License : Cecill-C

About

Description

Alinea.Adel (Architectural model of DEvelopment based on L-systems) allows to simulate the 3D architectural development of the shoot of gramineaous plant.

Content

The package hosts generic data structure and simulation tools for gramineaous plants(Fournier & Pradal, unpublished), the Adel-Maize (Fournier & Andrieu, 1998), Adel-Wheat (Fournier et al. 2003) models, together with the wheat parameterisation model of Abichou et al. (2013) and the plastic leaf model of Fournier & Pradal (2012)

Installation

python setup.py install

Requirements

OpenAlea.Deploy
OpenAlea.Mtg
OpenAlea.core
OpenAlea.visualea
OpenAlea.PlantGl
NumPy
Scipy
MatplotLib
Pandas
Rpy2

Installation with conda

Create an environment:

conda create -n adel -c openalea openalea.plantgl boost=1.66

Activate the environment:

[source] activate adel

Install the different packages

conda install -c conda-forge rpy2

conda install -c anaconda -c openalea openalea.mtg openalea.visualea openalea.core openalea.components numpy scipy matplotlib pandas pil

Install adel

python setup.py develop