/SSL4MIS

Semi supervised learning for medical image segmentation.

Primary LanguagePython

Semi-supervised-learning-for-medical-image-segmentation.

  • More papers and code repositories will be updated later, unfortunately, there are very few codes and data is open available. For easy evaluation and fair comparison , we are trying to build a semi-supervised medical image segmentation benchmark to boost the semi-supervised learning research in the medical image segmentation community. If you are interested, you can push your implementations or ideas to this repository at any time.

Literature reviews of semi-supervised learning approach for medical image segmentation (SSL4MIS).

Date The First and Last Authors Title Code Reference
2020-10 X. Cao and L. Cheng Uncertainty Aware Temporal-Ensembling Model for Semi-supervised ABUS Mass Segmentation None TMI2020
2020-09 Z. Zhang and W. Zhang Semi-supervised Semantic Segmentation of Organs at Risk on 3D Pelvic CT Images None Arxiv
2020-09 J. Wang and G. Xie Semi-supervised Active Learning for Instance Segmentation via Scoring Predictions None BMVC2020
2020-09 X. Luo and S. Zhang Semi-supervised Medical Image Segmentation through Dual-task Consistency DTC Arxiv
2020-08 X. Huo and Q. Tian ATSO: Asynchronous Teacher-Student Optimization for Semi-Supervised Medical Image Segmentation None Arxiv
2020-08 Y. Xie and Y. Xia Pairwise Relation Learning for Semi-supervised Gland Segmentation None MICCAI2020
2020-07 S. Li and X. He Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Images SASSNet MICCAI2020
2020-07 Y. Zhou and P. Heng Deep Semi-supervised Knowledge Distillation for Overlapping Cervical Cell Instance Segmentation MMT-PSM MICCAI2020
2020-07 J. Peng and C. Desrosiers Mutual information deep regularization for semi-supervised segmentation deepclustering MIDL2020
2020-07 Y. Xia and H. Roth Uncertainty-aware multi-view co-training for semi-supervised medical image segmentation and domain adaptation None WACV2020,MedIA2020
2020-07 X. Li and P. Heng Transformation-Consistent Self-Ensembling Model for Semisupervised Medical Image Segmentation TCSM TNNLS2020
2020-04 C. Liu and C. Ye Semi-Supervised Brain Lesion Segmentation Using Training Images with and Without Lesions None ISBI2020
2020-04 R. Li and D. Auer A Generic Ensemble Based Deep Convolutional Neural Network for Semi-Supervised Medical Image Segmentation SS ISBI2020
2020-04 K. Ta and J. Ducan A Semi-Supervised Joint Learning Approach to Left Ventricular Segmentation and Motion Tracking in Echocardiography None ISBI2020
2020-04 Q. Chang and D. Metaxas Soft-Label Guided Semi-Supervised Learning for Bi-Ventricle Segmentation in Cardiac Cine MRI None ISBI2020
2019-10 L. Yu and P. Heng Uncertainty-aware self-ensembling model for semi-supervised 3D left atrium segmentation UA-MT MICCAI2019
2019-10 G. Bortsova and M. Bruijne Semi-Supervised Medical Image Segmentation via Learning Consistency under Transformations None MICCAI2019
2019-10 H. Zheng and X. Han Semi-supervised Segmentation of Liver Using Adversarial Learning with Deep Atlas Prior None MICCAI2019
2019-10 Y. Zhao and C. Liu Multi-view Semi-supervised 3D Whole Brain Segmentation with a Self-ensemble Network None MICCAI2019
2019-10 H. Kervade and I. Ayed Curriculum semi-supervised segmentation None MICCAI2019
2019-10 S. Chen and M. Bruijne Multi-task Attention-based Semi-supervised Learning for Medical Image Segmentation None MICCAI2019
2019-10 Z. Xu and M. Niethammer DeepAtlas: Joint Semi-Supervised Learning of Image Registration and Segmentation None MICCAI2019
2019-10 S. Sedai and R. Garnavi Uncertainty Guided Semi-supervised Segmentation of Retinal Layers in OCT Images None MICCAI2019
2019-06 W. Cui and C. Ye Semi-Supervised Brain Lesion Segmentation with an Adapted Mean Teacher Model None IPMI2019
2019-04 M. Jafari and P. Abolmaesumi Semi-Supervised Learning For Cardiac Left Ventricle Segmentation Using Conditional Deep Generative Models as Prior None ISBI2019
2019-03 J. Peng and C. Desrosiers Deep co-training for semi-supervised image segmentation deepclustering PR2020
2019-01 Y. Zhou and A. Yuille Semi-Supervised 3D Abdominal Multi-Organ Segmentation via Deep Multi-Planar Co-Training None WACV2019
2018-10 P. Ganaye and H. Cattin Semi-supervised Learning for Segmentation Under Semantic Constraint None MICCAI2018
2018-10 A. Chartsias and S. Tsaftari Factorised spatial representation learning: application in semi-supervised myocardial segmentation None MICCAI2018
2018-09 X. Li and P. Heng Semi-supervised Skin Lesion Segmentation via Transformation Consistent Self-ensembling Model TCSM BMVC2018
2018-04 Z. Feng and D. Shen Semi-supervised learning for pelvic MR image segmentation based on multi-task residual fully convolutional networks None ISBI2018
2017-09 L. Gu and S. Aiso Semi-supervised Learning for Biomedical Image Segmentation via Forest Oriented Super Pixels(Voxels) None MICCAI2017
2017-09 S. Sedai and R. Garnavi Semi-supervised Segmentation of Optic Cup in Retinal Fundus Images Using Variational Autoencoder None MICCAI2017
2017-09 W. Bai and D. Rueckert Semi-supervised Learning for Network-Based Cardiac MR Image Segmentation None MICCAI2017

Code for semi-supervised whole tumor segmentation from Flair image.

Some implementations of semi-supervised learning methods can be found in this Link.

Citation

This repository is part of our previous work DTC , if you find it is useful in your research, please consider to cite:

@article{luo2020semi,
  title={Semi-supervised Medical Image Segmentation through Dual-task Consistency},
  author={Luo, Xiangde and Chen, Jieneng and Song, Tao and Chen, Yinan and Wang, Guotai and Zhang, Shaoting},
  journal={arXiv preprint arXiv:2009.04448},
  year={2020}
}