Pinned Repositories
.github
The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.
2023-12-14-uab
A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.
2024-07-09-uab
bulk_RNA_seq_workshop
Workshop materials for the U-BDS bulk RNA-seq lessons
git-novice
Version Control with Git
mulled
Mulled - Automatized Containerized Software Repository
multi-package-containers
Testing building mulled containers for multi-requirement tools.
scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
test-datasets
Test data to be used for automated testing with the nf-core pipelines
training_guides
Compilation of training guides
UAB Biological Data Science Core's Repositories
U-BDS/training_guides
Compilation of training guides
U-BDS/2023-12-14-uab
A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.
U-BDS/.github
The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.
U-BDS/2024-03-18-uab
U-BDS/2024-07-09-uab
U-BDS/bulk_RNA_seq_workshop
Workshop materials for the U-BDS bulk RNA-seq lessons
U-BDS/configs
Config files used to define parameters specific to compute environments at different Institutions
U-BDS/containers
Bioinformatics containers
U-BDS/GbmPdxSTR
Source code for the GbmPdxSTR app available at gliomamodels.com
U-BDS/git-novice
Version Control with Git
U-BDS/mulled
Mulled - Automatized Containerized Software Repository
U-BDS/multi-package-containers
Testing building mulled containers for multi-requirement tools.
U-BDS/scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
U-BDS/test-datasets
Test data to be used for automated testing with the nf-core pipelines
U-BDS/zebrafish_telencephalon_atlas
A R Shiny app of the transcriptome atlas of the maturing zebrafish telencephalon