Pinned Repositories
crispr-parsr
Software to parse and analyse deletions (and insertions) from a CRISPR resequencing experiment
LearnBioinformatics
Compilation of resources to learn NGS data analysis
Legion_toolkit
General scripts which make life easier when working on the Legion cluster at UCL
myriad-modulefiles
Module files for BLIC's software on UCL Myriad HPC
nf-co.re
Code and files for the main nf-core website >>>
nf-ginkgo
NextFlow pipeline for running Ginkgo
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Sarek_v2.2.1
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Sarek_v2.3.FIX1
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
tcga-ee
TCGA Expression Explorer (shiny app)
UCL-BLIC's Repositories
UCL-BLIC/tcga-ee
TCGA Expression Explorer (shiny app)
UCL-BLIC/LearnBioinformatics
Compilation of resources to learn NGS data analysis
UCL-BLIC/nf-ginkgo
NextFlow pipeline for running Ginkgo
UCL-BLIC/crispr-parsr
Software to parse and analyse deletions (and insertions) from a CRISPR resequencing experiment
UCL-BLIC/Legion_toolkit
General scripts which make life easier when working on the Legion cluster at UCL
UCL-BLIC/myriad-modulefiles
Module files for BLIC's software on UCL Myriad HPC
UCL-BLIC/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
UCL-BLIC/cbioportal_customization
Images for the UCL-CI cBioportal instance
UCL-BLIC/legion-buildscripts
Set of build scripts to install BLIC's software on UCL Legion HPC
UCL-BLIC/nf-co.re
Code and files for the main nf-core website >>>
UCL-BLIC/Sarek_v2.2.1
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
UCL-BLIC/Sarek_v2.3.FIX1
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
UCL-BLIC/chipseq
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
UCL-BLIC/clusterflow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
UCL-BLIC/ensembl-hive
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
UCL-BLIC/FORGE2
UCL-BLIC/ginkgo
Cloud-based single-cell copy-number variation analysis tool
UCL-BLIC/legion-modulefiles
Module files for BLIC's software on UCL Legion HPC
UCL-BLIC/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
UCL-BLIC/MuPeXI
MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
UCL-BLIC/myriad-buildscripts
Set of build scripts to install BLIC's software on UCL Myriad HPC
UCL-BLIC/standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository