/ted-web

TED: Automated Domain Parsing of AlphaFold DB

Primary LanguageTypeScriptMIT LicenseMIT

TED Web Server

Getting started

Install docker (docs)

Clone this repo

Set up environment

cp .env.template .env

Change secrets in .env

python3 -c "import secrets; print(secrets.token_urlsafe(32))"

Download data

https://zenodo.org/records/10848710

Start docker compose

docker compose build
docker compose up -d

Load data

docker compose exec db psql -U postgres app -f data/load_domainsummary.sql
docker compose exec db psql -U postgres app -f data/load_interactionsummary.sql
docker compose exec db psql -U postgres app -f data/load_chainparse.sql
docker compose exec db psql -U postgres app -c 'select tuples_processed from pg_stat_progress_copy'