IAP Features
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rernst commented
Mapping
- bwa mem
- sambamba sort, merge + markdup
GATK
- realignment
- haplotypecaller
- filter
- fingerprint
QC
- FastQC
- Picard
- bammetrics -> multiqc
Other
- ExonCov
- Kinship
- ExomeDepth
- cleanup
- Single sample vcf
- Merge runs
-
Gendercheck