Pinned Repositories
automated_testing
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
bioruby-vcf
Smart VCF parser
character-length
Test out character length/limit for different monitor resolutions
diyHue
Main diyHue software repo
DxNextflowWES
Genome Diagnostics Nextflow WES workflow
DxNextflowWGS
Genome Diagnostics Nextflow WGS workflow
ExonCov
ExonCov: Exon coverage statistics from BAM files
NextflowModules
UMCU Genetics Nextflow modules
rernst's Repositories
rernst/automated_testing
rernst/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
rernst/bioruby-vcf
Smart VCF parser
rernst/character-length
Test out character length/limit for different monitor resolutions
rernst/diyHue
Main diyHue software repo
rernst/GATK-QScripts
GATK QScripts used in our illumina variant calling pipeline.
rernst/genologics
Python interface to the GenoLogics LIMS server via its REST API.
rernst/illumina-runinfo
Illumina runinfo web tool
rernst/Intro_Python
Description introduction to python
rernst/manta
Structural variant and indel caller for mapped sequencing data
rernst/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
rernst/nextflow
A DSL for data-driven computational pipelines
rernst/patterns
A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
rernst/perlScripts
Repository with reusable Perl code/scripts.
rernst/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
rernst/pipeline
Pipeline of tools to process raw fastq data and produce meaningful genomic data
rernst/sambamba
Tools for working with SAM/BAM data
rernst/tools
Python package with helper tools for the nf-core community.