rernst's Stars
clintval/sample-sheet
Parse Illumina sample sheets with Python
mbhall88/rasusa
Randomly subsample sequencing reads or alignments
vgteam/vg
tools for working with genome variation graphs
nextflow-io/nextflow
A DSL for data-driven computational pipelines
bwa-mem2/bwa-mem2
The next version of bwa-mem
luntergroup/octopus
Bayesian haplotype-based mutation calling
pjcunningham/Flask-Select2
ALuesink/Trend_Analysis_tool
BoevaLab/FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
rafaelgou/php-apache2-basic-auth-manager
PHP Apache2 Basic Auth Manager
lektor/lektor
The lektor static file content management system
Intel-HLS/GKL
Accelerated kernel library for genomics
dahlia/awesome-sqlalchemy
A curated list of awesome tools for SQLAlchemy
Illumina/manta
Structural variant and indel caller for mapped sequencing data
dkoboldt/varscan
Variant calling and somatic mutation/CNV detection for next-generation sequencing data
brentp/vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
mongodb/js-bson
BSON Parser for node and browser
arq5x/gemini
a lightweight db framework for exploring genetic variation.
CSB5/lofreq
LoFreq Star: Sensitive variant calling from sequencing data
ag-grid/ag-grid
The best JavaScript Data Table for building Enterprise Applications. Supports React / Angular / Vue / Plain JavaScript.
genenetwork/genenetwork2
GeneNetwork (2nd generation)
pcingola/SnpEff
konradjk/exac_browser
Browser for ExAC consortium data
kristoff-it/vcf-mongo
django/django
The Web framework for perfectionists with deadlines.
DecodeGenetics/BamHash
molgenis/ngs-utils
Collection of notes and scripts related to NGS
ermouth/covercouch
Per-document ACL engine for CouchDB.
jwiegley/git-scripts
A bunch of random scripts I've either written, downloaded or clipped from #git.
broadinstitute/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.