/nf-core_template

Minimal nf-core compatible workflow template.

Primary LanguageNextflowMIT LicenseMIT

GitHub Actions CI Status GitHub Actions Linting StatusCite with Zenodo

Nextflow run with singularity

nf-core_template

Minimal nf-core compatible workflow template.

Install nf-core and Nextflow

python3 -m venv venv
source venv/bin/activate
pip install --upgrade pip
pip install nf-core

curl -s https://get.nextflow.io | bash
mv nextflow venv/bin/

Using this template

  • Replace WorkflowName with actual workflow name in all files.

ToDo

  • Add minimal workflow test CI and test configs.