UNFmontreal/Dcm2Bids

Issues

• Crash when a tag that usually contains a list is not in the JSON sidecar but present in the criteria of the config file

  #321 opened a month ago
  2

• `skip_dcm2niix` fails if dcm2niix is not in $PATH

  #320 opened a month ago
  2

• Support for MRS data?

  #319 opened a month ago
  1

• [BUG] Seems like output dir tree printing in dcm2bids_scaffold assumes UTF-8 encoding which breaks logging on windows

  #317 opened 3 months ago
  1

• Maybe a tab error

  #310 opened 5 months ago
  1

• Document new (and old) features

  #308 opened 5 months ago
  0

• Fix GHA

  #307 opened 5 months ago
  0

• bids validator not working properly

  #300 opened 5 months ago
  8

• Script removes task information from filenames.

  #298 opened 5 months ago
  8

• Allowing for post_op command's output to be printed to stdout

  #294 opened 5 months ago
  2

• Subprocess Error Assistance

  #290 opened 6 months ago
  3

• compKeys default for run numbering doesn't seem like a good one

  #288 opened 7 months ago
  1

• Error: Too many NIFTI images with the name

  #284 opened a year ago
  1

• `sidecar_changes` do not fetch all matches of the referenced description

  #282 opened a year ago
  0

• TypeError in Acquisition.init() when running dcm2bids

  #280 opened a year ago
  1

• KeyError: 'datatype'

  #279 opened a year ago
  1

• Processing order issue ? ```"IntendedFor" No id found for 'IntendedFor' value 'XX'```

  #276 opened a year ago
  4

• [BUG] dcmbids binary

  #273 opened a year ago
  0

• Provide a Docker image that includes pydeface

  #272 opened 5 months ago
  4

• post_op

  #258 opened a year ago
  6

• New features or enh for next release

  #256 opened a year ago
  0

• Creating several 3D images instead of a single 4D image.

  #255 opened a year ago
  2

• Typos in some files of the scaffold raise errors on the validator

  #254 opened a year ago
  0

• Should this line be pointing to one of the sidecar files?

  #252 opened a year ago
  2

• sidecar_changes doesn't support int / numerical objects

  #249 opened a year ago
  0

• Two H1s in "How to use advanced configuration" prevent full TOC

  #242 opened a year ago
  0

• IntendedFor and Sources with only relative path to dataset root is now deprecated

  #241 opened a year ago
  0

• Problem with dcm2bids

  #230 opened a year ago
  1

• [feature request] always add `run-<>` label

  #216 opened a year ago
  1

• dcm2bids goes crazy if `--participant` contains - or _

  #212 opened a year ago
  0

• Add "run" info to files even if not duplicates

  #198 opened a year ago
  1

• pydra-dcm2bids: Pydra tasks for dcm2bids

  #197 opened a year ago
  5

• Intended For in json files (What's the meaning of 0/1/2)

  #196 opened 2 years ago
  1

• intendedFor field of fmap .json file use \\ separator instead of /

  #193 opened 2 years ago
  1

• Need Ability to Configure dcm2niix Search Depth

  #191 opened 2 years ago
  4

• citation text

  #189 opened 2 years ago
  3

• Deface not working

  #188 opened a year ago
  1

• dcm2bids very slow on HPC

  #186 opened a year ago
  2

• dcm2bids not updating to 2.1.9 (conda environment)

  #184 opened 2 years ago
  3

• IntendedFor still shows ".gz" when dcm2niix outputs uncompressed files

  #180 opened a year ago
  1

• there is an attribute error in the underlying python package when running dcm2bids through singularity

  #179 opened 2 years ago
  1

• json files missing phase encoding direction, total readout time, slice timing, and echo spacing

  #178 opened 2 years ago
  1

• dots in nifti file names not correctly parsed

  #177 opened a year ago
  1

• default readme in BIDS dataset after conversion

  #176 opened 2 years ago
  2

• GE multi-echo fMRI data converted to run-01, run-02 instead of run-01_echo-01, run-01_echo-02, etc.

  #175 opened 2 years ago
  2

• 'Dicom Images Not Found" Error

  #174 opened 2 years ago
  1

• adding varying series descriptions for the same series as a list in config.json

  #173 opened a year ago
  4

• scaffold does not support over ride

  #170 opened 2 years ago
  2

• Can't use --forceDcm2niix option with dcm2bids_helper

  #160 opened 3 years ago
  0

• dcm2bids_scaffold needs a refresher

  #159 opened 2 years ago
  1