USCbiostats/aphylo

Issues

• Use `ape::as.phylo` methods

  #1 opened 8 years ago by gvegayon
  4

• Re-implement multi-function trees likelihood calculation

  #17 opened 5 years ago by gvegayon
  0

• `rdrop_annotations` returns with error when tip.annotations has a 9/NA

  #14 opened 7 years ago by gvegayon
  0

• Before starting simulations

  #13 opened 7 years ago by gvegayon
  0

• Plot loglikelihood

  #12 opened 7 years ago by gvegayon
  0

• Fix parameters in the likelihood

  #11 opened 7 years ago by gvegayon
  0

• Using reorder(x, "postorder") already gives us a peeling sequence!

  #10 opened 7 years ago by gvegayon
  2

• Visualization tools

  #9 opened 7 years ago by gvegayon
  0

• leave-one-out cross validation

  #8 opened 7 years ago by gvegayon
  0

• Phylogenetic Trees Visualization using the ggtree package

  #4 opened 7 years ago by gvegayon
  0

• Implement the MAP estimator

  #7 opened 8 years ago by gvegayon
  1

• phylo_mcmc has a bug when control = list(nchains) is greater than 1

  #6 opened 8 years ago by gvegayon
  1

• Numerical instability and computational complexity of the LogLike function

  #5 opened 8 years ago by gvegayon
  0

• Extending the MCMC function

  #3 opened 8 years ago by gvegayon
  1

• Need to change the name of the package

  #2 opened 8 years ago by gvegayon
  0