Pinned Repositories
branchwater-web
web app for search of SRA with Mastiff
GuideMaker
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
itsxpress
Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis
metagenomics
Tutorial for Metagenomics Analyses
Microbiome-workshop
2017 microbiome workshop website
micrompn
MicroMPN: A Python command line program for automating most probable number (MPN) estimates in microtiter plates
PanPipes
Test sets and pipeline scripts for pan-genomic graph analysis
q2_itsxpress
A plugin for qiime2 that runs ITSxpress
scinet-site
The SCINet website for the USDA-ARS
vica
Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes
USDA-ARS Genomics and Bioinformatics Research Unit's Repositories
USDA-ARS-GBRU/metagenomics
Tutorial for Metagenomics Analyses
USDA-ARS-GBRU/Microbiome-workshop
2017 microbiome workshop website
USDA-ARS-GBRU/RNA-seq_JNV1
General pipeline for RNA-seq using a pre-existing transcriptome, kallisto, and DESeq2
USDA-ARS-GBRU/US_rice
Key programs/scripts used in manuscript "Gene disruption by structural mutations drives selection in US rice breeding over the last century"
USDA-ARS-GBRU/ARS-RQC
A rolling quality control workflow for the USDA ARS GBRU
USDA-ARS-GBRU/fire_ant_viruses
Analyses in the paper "Valles, SM, Rivers AR. Nine new RNA viruses associated with the fire ant Solenopsis invicta from its native range. In prep."
USDA-ARS-GBRU/Numberjack
Python Combinatorial Optimisation Platform
USDA-ARS-GBRU/silva_to_qiime2
Scripts to format a Silva database into a qiime2 format
USDA-ARS-GBRU/web
Web content for Meren Lab
USDA-ARS-GBRU/website
Software Carpentry website