USDA-VS

USDA-Veterinary Services

Pinned Repositories

fastq_data_set-brucella
Brucella FASTQ test files
0 2 00
fastq_data_set-tb_complex
0 4 00
GenoFLU
Influenza data pipeline to automate genotyping assignment
Language:Python13 10 12
minimum_fastqs
testing files: smallest file size and still complete through vSNP_step1.py
0 3 00
NAHLN_AMR
Language:Python2 2 01
vcf_test_files
A small set of VCFs with expected output tables for script testing
0 4 00
vSNP
vSNP -- validate SNPs
Language:Python19 7 1112
vSNP3
vSNP -- validate SNPs
Language:Python3 3 61
vsnp3_test_dataset
Dataset for testing vSNP version 3 installation
0 2 00
vSNP_reference_options
vSNP supporting files
0 3 01

USDA-VS's Repositories

USDA-VS/vSNP
vSNP -- validate SNPs
Language:Python19 7 1112
USDA-VS/GenoFLU
Influenza data pipeline to automate genotyping assignment
Language:Python13 10 12
USDA-VS/vSNP3
vSNP -- validate SNPs
Language:Python3 3 61
USDA-VS/NAHLN_AMR
Language:Python2 2 01
USDA-VS/fastq_data_set-brucella
Brucella FASTQ test files
0 2 00
USDA-VS/fastq_data_set-tb_complex
0 4 00
USDA-VS/minimum_fastqs
testing files: smallest file size and still complete through vSNP_step1.py
0 3 00
USDA-VS/nvsl_bioinformatic_training
The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.
Language:HTML00
USDA-VS/vcf_test_files
A small set of VCFs with expected output tables for script testing
0 4 00
USDA-VS/vsnp3_test_dataset
Dataset for testing vSNP version 3 installation
0 2 00
USDA-VS/vSNP_archive
Archived versions of vSNP
Language:Python0 2 00
USDA-VS/vSNP_reference_options
vSNP supporting files
0 3 01
USDA-VS/Flumina
A pipeline for the analysis of Illumina sequence data from Influenza viruses
Language:R