/zoo-taxonomy-to-darwin-core

work from IOOS data workshop 2018 to align zooplankton data from Walton Smith cruises to Darwin Core

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

This repo is for processing the Zooplankton data collected from S FL MBON cruises in the FL keys so that it can be published to OBIS as a Darwin Core Archive.

The data is segmented annually.

Year data status & notes raw datasheets link OBIS ref
2018 rough 1st draft published as occurrence data only. Samples were processed by Jaime. from tylar's gdrive https://obis.org/dataset/afef5da2-614b-4208-aee6-c2413ed5ab76
2019 Raw Data is being entered for 500 um and 200 um (currently no/few 64 um examined) Currently in a box reop UNPUBLISHED
2020 Raw Data is being entered for 500 um and 200 um (currently no/few 64 um examined) Currently in a box reop UNPUBLISHED
2021 Raw Data is being entered for 500 um and 200 um (currently no/few 64 um examined, only partial year) Currently in a box reop UNPUBLISHED
2022 Some collected. Samples are not processed. . .
  • zooplankton 2016-2017 was identified by microscopy done by Jaime
  • zooplankton 2018-2021 was identified by microscopy done by Natalia

data processing steps

  1. collect the data using the sheets (TODO: link the raw data collection spreadsheets here
  2. run the relevant scripts to convert the collection sheets into a DwC archive
  3. upload to OBIS via one of the IPT nodes listed here (Caribbean?).

additional links