UTHSCSA-CIRD/chinotype

General purpose script for looking for over and under represented EHR facts in an i2b2 patient-set. Can be used for finding healthcare outcomes disparities, comorbidities, and who knows what else. The name is a portmanteau of Chi-squared and phenotype.

Python

Issues

Meta ticket on improving performance
#7 opened 8 years ago by bokov
2
For H_FOO and L_FOO use FOO as a denominator
#10 opened 8 years ago by bokov
0
Capability to take a CONCEPT_CD as input
#11 opened 8 years ago by bokov
0
PCONCEPTS_PATS should be a unique index
#5 opened 8 years ago by bokov
1
When run with -m option, chinotype fails to find a PSID for a given QMID
#8 opened 8 years ago by bokov
1
Next steps for valueflags
#9 opened 8 years ago by bokov
0
Fix groupings of HCPCS (procedure) codes that lack a C_BASECODE
#6 opened 8 years ago by bokov
0
Check for and create indexes independently of tables.
#4 opened 8 years ago by bokov
0