Cell Biology, Neurobiology and Biophysics Department of Utrecht University
code generated in the department
Utrecht, the Netherlands
Pinned Repositories
ComDet
ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
ContourLines
imagej plugin generating contour lines with equal spacing
Correlescence
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
DoM_Utrecht
Detection of Molecules plugin for ImageJ, Utrecht University
KymoResliceWide
ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves
PTU_Reader
ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files
radialitymap
Splitting image to radial and non-radial components ImageJ macro
rods-detection-in-noisy-images
Detection of straight line segments (rods) in noisy images
TrackMate2MTrackJ
converter of Trackmate XML files to MTrackJ MDF
ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
Cell Biology, Neurobiology and Biophysics Department of Utrecht University's Repositories
UU-cellbiology/ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
UU-cellbiology/ComDet
ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
UU-cellbiology/DoM_Utrecht
Detection of Molecules plugin for ImageJ, Utrecht University
UU-cellbiology/Correlescence
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
UU-cellbiology/PTU_Reader
ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files
UU-cellbiology/KymoResliceWide
ImageJ plugin making kymographs of maximum or average intensity with wide lines, polylines, curves
UU-cellbiology/radialitymap
Splitting image to radial and non-radial components ImageJ macro
UU-cellbiology/rods-detection-in-noisy-images
Detection of straight line segments (rods) in noisy images
UU-cellbiology/ContourLines
imagej plugin generating contour lines with equal spacing
UU-cellbiology/bvv-playground
playing with BigVolumeViewer LUTs/gamma/render
UU-cellbiology/TrackMate2MTrackJ
converter of Trackmate XML files to MTrackJ MDF
UU-cellbiology/AIS
axon initial segment characterization/alignment
UU-cellbiology/Axonal_transport_model
Simple mathematical model of bidirectional active transport in axons (written in Mathematica)
UU-cellbiology/MTA
Multiscale Trend Analysis
UU-cellbiology/MIRAO_DeviceAdapter
Device adapter for MIRAO52E for Micro-Manager
UU-cellbiology/neuron_motorPAINT
Analysis codes for neuronal motor-PAINT assays to process raw movies, make reconstructions, and perform analysis.
UU-cellbiology/REALM
Adaptive Optics plugin for MicroManager
UU-cellbiology/rods_bending
Mathematica package to calculate the shape of thin flexible elastic rod under load.
UU-cellbiology/UU_SmartMicroscopy
Python-based modular platform to automate microscopes and design smart microscopy experiments.