UW-GAC/analysis_pipeline

Issues

• Integer sample.id must be character

  #60 opened 5 months ago by wwgordon
  1

• Refactor TopmedPipeline.py Cluster classes

  #55 opened 2 years ago by amstilp
  0

• Add plot of working responses vs linear predictor to null model report

  #54 opened 2 years ago by amstilp
  0

• Allow the user to choose which p-value is being plotted for aggregation tests

  #53 opened 3 years ago by amstilp
  0

• Residual vs fitted null model report plots are different for glm and GMMAT

  #52 opened 3 years ago by amstilp
  2

• Add null model converged status to null model report

  #51 opened 3 years ago by amstilp
  1

• Modify thinPoints to handle cases when extreme p-values exist

  #27 opened 5 years ago by amstilp
  4

• Recent version of KING not compatibile with king.py

  #48 opened 3 years ago by wwgordon
  0

• Docs: Omit suffix for bed_file

  #47 opened 3 years ago by wwgordon
  0

• Included chrX VCF fails due to containing NA in FILTER column.

  #46 opened 3 years ago by aofarrel
  2

• Update MAF/missingness filter in pca_corr_vars to work on only the sample set used in PCA

  #41 opened 4 years ago by amstilp
  3

• Use multiple cores in `pca_corr_vars.R`

  #40 opened 4 years ago by amstilp
  1

• conditional analysis column name

  #31 opened 4 years ago by jennaccarlson
  1

• Optimize uwgac/topmed-master:2.6.0

  #30 opened 4 years ago
  1

• GRM

  #18 opened 5 years ago by jgx65
  0

• averaging GRMs

  #17 opened 5 years ago by jgx65
  0

• pcrelateMakeGRM is now defunct

  #7 opened 6 years ago by DanielEWeeks
  1

• Error openning

  #4 opened 7 years ago by phuwanat
  2