VadimDu

data-download

gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

Bioinformatic-tool_for_sam-vcf_manipulation

Bioinformatic tool for filtering and manipulating sam/bam alignment, bcf/vcf variant calling and illumina raw fastq files

Deep-Learning-to-predict-resistance-to-Fluoroquinolone-antibiotics

In this interactive tutorial we will preform machine-learning (deep learning) analysis of bacterial DNA gyrase/topoisomerase in order to predict resistance to Fluoroquinolones antibiotics. We will used Convolutional Neural Network (CNN) based classifier to achieve it.

DNA-sequences-accessory-tools

A collection of small useful tools for performing basic manipulations and obtaining statistical information on DNA sequences

getting-started

Getting started with Docker

humann

HUMAnN 2.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

pouchitis_classifiers

Dysbiosis in metabolic genes of the gut microbiomes of patients with inflammatory bowel diseases

trial_repo

This is a trial repo for workning with Git from local pc

singlem

Novelty-inclusive microbial community profiling of shotgun metagenomes

VadimDu/Deep-Learning-to-predict-resistance-to-Fluoroquinolone-antibiotics

In this interactive tutorial we will preform machine-learning (deep learning) analysis of bacterial DNA gyrase/topoisomerase in order to predict resistance to Fluoroquinolones antibiotics. We will used Convolutional Neural Network (CNN) based classifier to achieve it.

VadimDu/DNA-sequences-accessory-tools

A collection of small useful tools for performing basic manipulations and obtaining statistical information on DNA sequences

VadimDu/Bioinformatic-tool_for_sam-vcf_manipulation

Bioinformatic tool for filtering and manipulating sam/bam alignment, bcf/vcf variant calling and illumina raw fastq files

VadimDu/getting-started

Getting started with Docker

VadimDu/humann

HUMAnN 2.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

VadimDu/pouchitis_classifiers

Dysbiosis in metabolic genes of the gut microbiomes of patients with inflammatory bowel diseases

VadimDu/trial_repo

This is a trial repo for workning with Git from local pc