Pinned Repositories
Admin-Tools
Various scripts used to monitor the HPC environment.
bifurcatoR
bifurcatoR package
ExpDesign2021
A package to ensure that all dependencies are installed for Experimental Design & Biostats practical sessions. Scroll down to the README for installation details.
intent
reformat inDrop fastqs so they look like 10X genomics fastqs
lambdaR
Bringing R as runtime to AWS Lambda
pbsPretty
colorful, descriptive alternives to pbsnodes and qstat
s3vs
Demo viewer for Aperio SVS images from Amazon S3
slinky
Putting the fun into LINCS analysis
VAIDocker
centos 8 container for user admin on compute nodes
vaitools
a web app for managing tools
Van Andel Research Institute's Repositories
VanAndelInstitute/s3vs
Demo viewer for Aperio SVS images from Amazon S3
VanAndelInstitute/bifurcatoR
bifurcatoR package
VanAndelInstitute/Admin-Tools
Various scripts used to monitor the HPC environment.
VanAndelInstitute/VAIDocker
centos 8 container for user admin on compute nodes
VanAndelInstitute/aws-restore
awsRestore is a python script that runs on the command line for restoring entire folders and subfolders stored in AWS Glacier Deep Archive.
VanAndelInstitute/genomicsCoreFileMgmt
tools to manage the VAI genomics core file lifecycle
VanAndelInstitute/Puppet-Environment
The current Puppet environment in use at VAI.
VanAndelInstitute/aws-cptac-sync
Data transformation and integration service between CPTAC BCR and CDR.
VanAndelInstitute/pbc-iscan-qcarray
Infinium QC Array workflow
VanAndelInstitute/ADGroupManager
command line management of groups using python. list,add,remove users from AD groups
VanAndelInstitute/awsHPCcompute
compute nodes on hpc
VanAndelInstitute/Biscuit_Snakemake_Workflow
Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
VanAndelInstitute/CentOS-Dockerfiles
Dockerfiles for various common implementations
VanAndelInstitute/cloudfront-authorization-at-edge
Protect downloads of your content hosted on CloudFront with Cognito authentication using cookies and Lambda@Edge
VanAndelInstitute/DUgen-pub
web-based visualization of spectrum scale data usage. kind of like agedu
VanAndelInstitute/globus-connect-server-deploy
Deployment tools for Globus Connect Server
VanAndelInstitute/graylog-docker-compose
A set of Docker Compose files that allow you to quickly spin up a Graylog instance for testing or demo purposes.
VanAndelInstitute/MethodsInGenomics-Oct2021
VanAndelInstitute/motuz
Motuz - A web based infrastructure for large scale data movements between on-premise and cloud
VanAndelInstitute/nsscache
asynchronously synchronise local NSS databases with remote directory services
VanAndelInstitute/ondemand_codeserver
BETA - Batch Connect - OSC Code Server
VanAndelInstitute/oodRstudio
Open OnDemand apps, rstudio
VanAndelInstitute/rclone
"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Yandex Files
VanAndelInstitute/service-workbench-on-aws
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
VanAndelInstitute/shinyBifurcatoR
shiny interface for bifurcatoR
VanAndelInstitute/slurmpretty
slurmPretty
VanAndelInstitute/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
VanAndelInstitute/step-ca-DynamoDB
Add an AWS DynamoDB implementation to step-ca
VanAndelInstitute/VAICryoTools
various tools used to support cryoem from an IT perspective
VanAndelInstitute/WorldsSimplestCodeReview
The importance of replication and the unimpeachable virtues of self-correcting science