VanLoo-lab/ascat

How can I use ascat.prepareHTS to get the LogR and BAF file for tumor-only samples?

suyanxun opened this issue · 1 comments

suyanxun commented
How can I use ascat.prepareHTS to get the LogR and BAF file for tumor-only samples?
tlesluyes commented

Hi @suyanxun,

As mentioned in the documentation, ascat.prepareHTS does require tumour/normal pairs so you can't use it for unmatched tumours. More information [here]{https://github.com/VanLoo-lab/ascat/issues/134}.

Cheers,

Tom.